cluster # 47

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Anopheles gambiae
cluster # 47 cluster # 47 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_47#0 length = 683 sequences # 1

consensus_47#1 length = 501 sequences # 1

consensusID : consensus_47#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGTAGCCGCTTTGTCACCACAAACAACCTCAAATTTACTACCAGCACCACCACCACCACCACCACTAGCAACAACAGCAGCAACCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTAAGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATACGCCACCCACCACAGTCCTTCACCAGCCCAGTACGAGAGATAAATCGGTGTGTGTATGTGTGTGGGGACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTCAGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTCGCGCTGAGGATCATTCGCTTTGATTAGGTTTAACGCTATAAGTTTACACACATTAACACACACACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGCAAAGGTTAGTTTCACAAACAAGTCTGTGCGCGGTACAAATGCTGATAGCCAAGCGCTTGCGATCTTATTAGCGGCGGTTTAGTGTGAGGTTTTGAACTGATTTTCACGTCAAATGGCCATTATTTTTCAACTTTCTCTTATACTACTACTACTCAAGCCCATCCCCATACAATTATTTTTACATGGTTTGATTTTCGTTTCACTGTGTTATGG]

[+] EMBL BM630377             [CCGGTAGCCGCTTTGTCACCACAAACAACCTCAAATTTACTACCAGCACCACCACCACCACCACCACTAGCAACAACAGCAGCAACCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTAAGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATACGCCACCCACCACAGTCCTTCACCAGCCCAGTACGAGAGATAAATCGGTGTGTGTATGTGTGTGGGGACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTCAGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTCGCGCTGAGGATCATTCGCTTTGATTAGGTTTAACGCTATAAGTTTACACACATTAACACACACACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGCAAAGGTTAGTTTCACAAACAAGTCTGTGCGCGGTACAAATGCTGATAGCCAAGCGCTTGCGATCTTATTAGCGGCGGTTTAGTGTGAGGTTTTGAACTGATTTTCACGTCAAATGGCCATTATTTTTCAACTTTCTCTTATACTACTACTACTCAAGCCCATCCCCATACAATTATTTTTACATGGTTTGATTTTCGTTTCACTGTGTTATGG]




>consensus_47#0
CCGGTAGCCGCTTTGTCACCACAAACAACCTCAAATTTACTACCAGCACCACCACCACCA
CCACCACTAGCAACAACAGCAGCAACCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTA
AGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATAC
GCCACCCACCACAGTCCTTCACCAGCCCAGTACGAGAGATAAATCGGTGTGTGTATGTGT
GTGGGGACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTC
AGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTCGC
GCTGAGGATCATTCGCTTTGATTAGGTTTAACGCTATAAGTTTACACACATTAACACACA
CACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGCAAAGGTTAGT
TTCACAAACAAGTCTGTGCGCGGTACAAATGCTGATAGCCAAGCGCTTGCGATCTTATTA
GCGGCGGTTTAGTGTGAGGTTTTGAACTGATTTTCACGTCAAATGGCCATTATTTTTCAA
CTTTCTCTTATACTACTACTACTCAAGCCCATCCCCATACAATTATTTTTACATGGTTTG
ATTTTCGTTTCACTGTGTTATGG

consensusID : consensus_47#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTAAGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATACGCCACCCACCACAGTCCTTCATAAGCCCAGTACGAGAGATAAATCGGTGTGTGTTTGTGTGTGTGAACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTCAGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTTCGCGCTGAGGATCATTCGCTCTAGCTTTGATTAGGTTTAACGCTATAAGTTTTACACACATTAACACACACACACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGCAAAGGTTAGTTTCACAAACAAGTTGTGCGCAGAACAAATGCTGATAGCCAAGCGCTTGCGATCTTATTATCGGTGGTTTAGT]

[+] EMBL BM650045             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTAAGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATACGCCACCCACCACAGTCCTTCATAAGCCCAGTACGAGAGATAAATCGGTGTGTGTTTGTGTGTGTGAACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTCAGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTTCGCGCTGAGGATCATTCGCTCTAGCTTTGATTAGGTTTAACGCTATAAGTTTTACACACATTAACACACACACACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGCAAAGGTTAGTTTCACAAACAAGTTGTGCGCAGAACAAATGCTGATAGCCAAGCGCTTGCGATCTTATTATCGGTGGTTTAGT]




>consensus_47#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTAA
GTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATACG
CCACCCACCACAGTCCTTCATAAGCCCAGTACGAGAGATAAATCGGTGTGTGTTTGTGTG
TGTGAACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTCA
GTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTTCGC
GCTGAGGATCATTCGCTCTAGCTTTGATTAGGTTTAACGCTATAAGTTTTACACACATTA
ACACACACACACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGCA
AAGGTTAGTTTCACAAACAAGTTGTGCGCAGAACAAATGCTGATAGCCAAGCGCTTGCGA
TCTTATTATCGGTGGTTTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_47#0      CCGGTAGCCGCTTTGTCACCACAAACAACCTCAAATTTACTACCAGCACCACCACCACCA 60
consensus_47#1      ------------------------------------------------------------
                                                                                

consensus_47#0      CCACCACTAGCAACAACAGCAGCAACCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTA 120
consensus_47#1      CCGCC-CACGCGTCCGCCCACGCGTCCGGCGGGATCACTTGTCGTCCGGGGTCACAAGTA 59
                    ** ** *  **  *  *    **  ***********************************

consensus_47#0      AGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATAC 180
consensus_47#1      AGTCGTGAAAGTGTCACACGATGGGTGCATTCTTTGCCCGTTCGCTGCAGGAAAAAATAC 119
                    ************************************************************

consensus_47#0      GCCACCCACCACAGTCCTTCACCAGCCCAGTACGAGAGATAAATCGGTGTGTGTATGTGT 240
consensus_47#1      GCCACCCACCACAGTCCTTCATAAGCCCAGTACGAGAGATAAATCGGTGTGTGTTTGTGT 179
                    *********************  ******************************* *****

consensus_47#0      GTGGGGACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTC 300
consensus_47#1      GTGTGAACCGCCCCTGTATCTGTACAGCAAACCGGGCTGTACGACGCGCCGGTACGGTTC 239
                    *** * ******************************************************

consensus_47#0      AGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTT-CG 359
consensus_47#1      AGTAAGCGGAAAACGGCGGGCAACGTTAACAAGTCAGAACAAGTTAGCATATTAGTTTCG 299
                    ********************************************************* **

consensus_47#0      CGCTGAGGATCATTCGCT------TTGATTAGGTTTAACGCTATAAGTTT-ACACACATT 412
consensus_47#1      CGCTGAGGATCATTCGCTCTAGCTTTGATTAGGTTTAACGCTATAAGTTTTACACACATT 359
                    ******************      ************************** *********

consensus_47#0      AACACACACAC--GCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGC 470
consensus_47#1      AACACACACACACGCACAGGATATAGTACGATCGATCGTACATTTTGCGGTAGCTAAAGC 419
                    ***********  ***********************************************

consensus_47#0      AAAGGTTAGTTTCACAAACAAGTCTGTGCGCGGTACAAATGCTGATAGCCAAGCGCTTGC 530
consensus_47#1      AAAGGTTAGTTTCACAAACAAGT-TGTGCGCAGAACAAATGCTGATAGCCAAGCGCTTGC 478
                    *********************** ******* * **************************

consensus_47#0      GATCTTATTAGCGGCGGTTTAGTGTGAGGTTTTGAACTGATTTTCACGTCAAATGGCCAT 590
consensus_47#1      GATCTTATTATCGGTGGTTTAGT------------------------------------- 501
                    ********** *** ********                                     

consensus_47#0      TATTTTTCAACTTTCTCTTATACTACTACTACTCAAGCCCATCCCCATACAATTATTTTT 650
consensus_47#1      ------------------------------------------------------------
                                                                                

consensus_47#0      ACATGGTTTGATTTTCGTTTCACTGTGTTATGG 683
consensus_47#1      ---------------------------------