cluster # 4701

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4701 cluster # 4701 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4701#0 length = 653 sequences # 1

consensus_4701#1 length = 613 sequences # 2

consensusID : consensus_4701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCACCAGCACCACCAGCAGCACCAGCAGCAGCAGCACAGCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTCGTGCGTGTGTCTGTGTGTTGGTGTGAGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGTGCCGCCACCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCTGATTTGTGGCGTATGTGGGTGTGTGTGTGTGTGTATGTGTGTGGAAAACATCACTCGCTAAAGTCATTCCCTTTCGGAAGGCATCAAAACACACGGGTCGGCAGTGTTTGTAATTGAGTTTAGTGAAGCAGGCAAATCGGTGGTGTCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCGTGTAGCAAATTTGTGTGGCCTGCGTTTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCTTTTCAGGCGCACAATCCG]

[+] EMBL BM644918             [CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCACCAGCACCACCAGCAGCACCAGCAGCAGCAGCACAGCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTCGTGCGTGTGTCTGTGTGTTGGTGTGAGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGTGCCGCCACCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCTGATTTGTGGCGTATGTGGGTGTGTGTGTGTGTGTATGTGTGTGGAAAACATCACTCGCTAAAGTCATTCCCTTTCGGAAGGCATCAAAACACACGGGTCGGCAGTGTTTGTAATTGAGTTTAGTGAAGCAGGCAAATCGGTGGTGTCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCGTGTAGCAAATTTGTGTGGCCTGCGTTTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCTTTTCAGGCGCACAATCCG]




>consensus_4701#0
CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCACCAGCACCACCAGCAGCACCAGCA
GCAGCAGCACAGCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATT
GAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTCGTGCGTGTGTCTGTGTGTTGGTGTG
AGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCAC
GGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTC
GTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGTGCCGCCA
CCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCTGATTTGTGGCGTATGTGGGTGTGTG
TGTGTGTGTATGTGTGTGGAAAACATCACTCGCTAAAGTCATTCCCTTTCGGAAGGCATC
AAAACACACGGGTCGGCAGTGTTTGTAATTGAGTTTAGTGAAGCAGGCAAATCGGTGGTG
TCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCGTGTAGCAAATTTGTGTGGCCTGCGT
TTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCTTTTCAGGCGCACAATCCG

consensusID : consensus_4701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 613
fasta sequence

                              [CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCCAGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCACGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTGTTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTATCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCATATTCGTGTCCAAAGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTGCGTGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGT]

[+] EMBL BM577680             [CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCCAGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCACGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTGTTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTATCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCATATTCGTGTCCAAAGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACGCCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTGCGTGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTGCTGCTGCTCCTGT]
[+] EMBL BM654719             [                               ccgCACAGTCCCAGGTCGTTTGCTTCTCCAGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCACGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTGTTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTATCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGGTGGTTTAGTACCATATTtcg                                                                                                                                                                                                                                                                                                                               ]




>consensus_4701#1
CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCC
AGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCA
CGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTG
TTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTA
TCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCATATTCGTGTCCAA
AGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACGC
CACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTGCG
TGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTACGGCA
ACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCATCATC
ATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACGTGCTG
CTGCTGCTCCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4701#0      ------------------------------------------------------------
consensus_4701#1      CGACCCACGCGTCCGCTTGCTCCTCTTGAACGCTCACAGTCCCAGGTCGTTTGCTTCTCC 60
                                                                                  

consensus_4701#0      ------------------------------------------------------------
consensus_4701#1      AGCACAAACGAGCAAAGCCCAGGCTCGAAGGGGTCGAAGCATCACAGTTAGGTTAGGTCA 120
                                                                                  

consensus_4701#0      ------------------------------------------------------------
consensus_4701#1      CGCCGTGTTCCTCGCCGAACCACCCGGAAATACACGCGAAGACGGATGGTAATGCTTCTG 180
                                                                                  

consensus_4701#0      ------------------------------------------------------------
consensus_4701#1      TTGTGCGTGCGTGCAGGCGTGTAGTATTGTTTTCGGAGCCAAGCAAACCATCGCATTGTA 240
                                                                                  

consensus_4701#0      --------------------CCGGCCCGAGCAGCAGCAGCAGTAGTAGTAGTCGCA-CCA 39
consensus_4701#1      TCGTTTCGTGCACGTTTGTGTCGGTTACTCTTGTTGTTTTAGTACCA-TATTCGTGTCCA 299
                                           ***        *  *    ****  * ** ***   ***

consensus_4701#0      GCACCACCAGCAGCACCAGCAGCAGCAGCACAG----CAGCAGCAGCAGTAATATCAACG 95
consensus_4701#1      AAGTCGTCCGAAACGCGTTAAGAATACGTTCAATTGTCAGCAGCAGCAGTAATATCAACG 359
                          *  * * * * *    ** *   *  **     ***********************

consensus_4701#0      CCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGTTC 155
consensus_4701#1      CCACCTTCGATCGGGCAGGAAGATTGAGGTGTGCGAAAAGAAAATAAATCGTTTGTGT-- 417
                      **********************************************************  

consensus_4701#0      GTGCGTGTGTCTGTGTGTTGGTGTGAGCTCGTGTCTCTAGCGTGGGACGGCATGGTGGTA 215
consensus_4701#1      --GCGTGCGTCTGTGTGTTGGTGTGAGCGCGTGTCTCTAGCGTGGGACGGCATGGTGGTA 475
                        ***** ******************** *******************************

consensus_4701#0      CGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCA 275
consensus_4701#1      CGGCAACCGTAATCGAAAATTGCACGGAACATCATTTCCCACCCATCATTATCGTAGCCA 535
                      ************************************************************

consensus_4701#0      TCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACG 335
consensus_4701#1      TCATCATCATCATCATCTGCACCTCGTTCGGAGTCACCCACGCGCCATCATTGGCGCACG 595
                      ************************************************************

consensus_4701#0      TGCTGCTGCTGCTCCTGTGCCGCCACCGTGAGCTCGGAAAAAGCATGAGCGGAAATCGCT 395
consensus_4701#1      TGCTGCTGCTGCTCCTGT------------------------------------------ 613
                      ******************                                          

consensus_4701#0      GATTTGTGGCGTATGTGGGTGTGTGTGTGTGTGTATGTGTGTGGAAAACATCACTCGCTA 455
consensus_4701#1      ------------------------------------------------------------
                                                                                  

consensus_4701#0      AAGTCATTCCCTTTCGGAAGGCATCAAAACACACGGGTCGGCAGTGTTTGTAATTGAGTT 515
consensus_4701#1      ------------------------------------------------------------
                                                                                  

consensus_4701#0      TAGTGAAGCAGGCAAATCGGTGGTGTCTGTGTGTGTGTGTGTTGTGTGTGCGTGTGTGCG 575
consensus_4701#1      ------------------------------------------------------------
                                                                                  

consensus_4701#0      TGTAGCAAATTTGTGTGGCCTGCGTTTTCCTACCGTGGAGGTGTTAAGCTCGATGCTGCT 635
consensus_4701#1      ------------------------------------------------------------
                                                                                  

consensus_4701#0      TTTCAGGCGCACAATCCG 653
consensus_4701#1      ------------------