cluster # 4713

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Anopheles gambiae
cluster # 4713 cluster # 4713 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4713#0 length = 722 sequences # 2

consensus_4713#1 length = 618 sequences # 1

consensusID : consensus_4713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 722
fasta sequence

                              [GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTGTGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGTTTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAGCGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACACCGCACACACACAC]

[+] EMBL BM631454             [GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTGTGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGTTTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAGCGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTC                                                                                                                                                    ]
[+] EMBL BM593519             [                     ccgCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTGTGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGTTTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAGCGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACACCGCACACACACAC]




>consensus_4713#0
GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTG
TGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGT
TTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAG
CGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTA
GAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAG
CCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACC
GGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTA
CGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGT
CTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCA
CCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAA
ATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCAT
CCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACACCGCACACACAC
AC

consensusID : consensus_4713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGGTCTTACGTCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCGGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCGCACACACACACACACACGCGCGCACTCACACGCGGGCACATGTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAGGGGCACACCACATCCTTATCATGGTGTAGTTTTTTAAAGCAAC]

[+] EMBL BM590893             [CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGGTCTTACGTCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCGGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCGCACACACACACACACACGCGCGCACTCACACGCGGGCACATGTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAGGGGCACACCACATCCTTATCATGGTGTAGTTTTTTAAAGCAAC]




>consensus_4713#1
CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTAGAAAGTGGCTGCACGAGAAACCAAC
TCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAGCCAAAAAGGTTCTAACCATTTTCGT
GATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACCGGCATATTACCGGAGGTGAAAATTC
TGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTACGTCGGTCTTACGTCGTGTGTGTTG
CGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGTCTCCGTTGATAGCCCCCGGAAGGTT
GTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCACCAGGGCAGTGTGATAGTGTGCGCG
TTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAAATTCCAGCGGTTCCTTCGACAGGTG
TTATTGAAATCTTGCTCATCAATGCGCTTGTGCATCCGTCCTTGAAACTGGCGAAGAGAA
AGGGAGTCTGTAGCAACCGCACACACACACACACACGCGCGCACTCACACGCGGGCACAT
GTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAGGGGCACACCACATCCTTATCATGGT
GTAGTTTTTTAAAGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4713#0      GACCCACGCGTCCGCCCACGCGTCCGAGCGGAGGTGTCTCGCAGGTTGCTCGCGTCCCTG 60
consensus_4713#1      ------------------------------------------------------------
                                                                                  

consensus_4713#0      TGTTTTTTGTTGTTTTTTTGGTTATACACACGGTGCCGCGATGAGTACGTGCGCGGGGGT 120
consensus_4713#1      ------------------------------------------------------------
                                                                                  

consensus_4713#0      TTAGCGGTGGTTTAGTGCTAAAAAGAAGAAGAAAATAAAACCCGTTTTCCGTCTTGTAAG 180
consensus_4713#1      ------------------------------------------------------------
                                                                                  

consensus_4713#0      CGCACCGAAAAACGGCAGACCGAGCAGAATCGAGTTACCCGCGGGAGTCCCGGGAGCGTA 240
consensus_4713#1      -------------------------CCGCCCACGCGTCCGGCGGGAGTCCCGGGAGCGTA 35
                                                    *  *   ** ********************

consensus_4713#0      GAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAG 300
consensus_4713#1      GAAAGTGGCTGCACGAGAAACCAACTCCAACAAGTGATCCAACTCCAGTTCTTCCAGCAG 95
                      ************************************************************

consensus_4713#0      CCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACC 360
consensus_4713#1      CCAAAAAGGTTCTAACCATTTTCGTGATAGGTTGTTTTAGCAAGTGTTTTGCACTGTACC 155
                      ************************************************************

consensus_4713#0      GGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTA 420
consensus_4713#1      GGCATATTACCGGAGGTGAAAATTCTGTGCAATGGCAGTGTAGTGTGGAAACAGGAATTA 215
                      ************************************************************

consensus_4713#0      CGTCGTTCTTACGCCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGT 480
consensus_4713#1      CGTCGGTCTTACGTCGTGTGTGTTGCGATTGCGGCCGTCTCCGTTGTTTACTGCTCCCGT 275
                      ***** ******* **********************************************

consensus_4713#0      CTCCGTTGATAGCCCCCAGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCA 540
consensus_4713#1      CTCCGTTGATAGCCCCCGGAAGGTTGTTGGTTTATTGTTTTCTGTTTAGTTGAAGGGCCA 335
                      ***************** ******************************************

consensus_4713#0      CCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAA 600
consensus_4713#1      CCAGGGCAGTGTGATAGTGTGCGCGTTTGTGGTCCGAGTCCCAATCGCTCTCTGCGGGAA 395
                      ************************************************************

consensus_4713#0      ATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCAT 660
consensus_4713#1      ATTCCAGCGGTTCCTTCGACAGGTGTTATTGAAATCTTGCTCATCAATGCGCTTGTGCAT 455
                      ************************************************************

consensus_4713#0      CCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCCTACAC-CGCACACACA 719
consensus_4713#1      CCGTCCTTGAAACTGGCGAAGAGAAAGGGAGTCTGTAGCAACCGCACACACACACACACA 515
                      *******************************************  **** * ********

consensus_4713#0      CAC--------------------------------------------------------- 722
consensus_4713#1      CGCGCGCACTCACACGCGGGCACATGTTGCTGCAGTGCATGCATCTTCGGTCAAGCAAAG 575
                      * *                                                         

consensus_4713#0      -------------------------------------------
consensus_4713#1      GGGCACACCACATCCTTATCATGGTGTAGTTTTTTAAAGCAAC 618