cluster # 4723

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Anopheles gambiae
cluster # 4723 cluster # 4723 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4723#0 length = 764 sequences # 2

consensus_4723#1 length = 536 sequences # 1

consensusID : consensus_4723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 764
fasta sequence

                              [CCGGTTGGTGGGATCGGTTGGGTGTGCAAGAGGGAGAGAGAGAGAGAGAGCTAGTACGGAAGTAAGAAAAAGCAACAAGGACATACAAAAAAGGTTTAAAAACACGTAATATTTCGGATACTAATTATTGTTAGAGAACACTAGAAGCAGTAAACGCAAGTTGTTCGCATTCATACAGGATGGAAAATGTTCCTCGCTCGCAAAGGAACCTCTTCTTAGCGCCGTATCGCGTACGATGAAAATGAAAGAGACAGAGAGAGATAGAGAGAGAGAGAGCAAGAGAGAGTGTTTGTGGAGGTTTGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAGTAGCTAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTGAGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGTGG-AATT----ATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAAGCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCCCAATCGAATGGCACGAAACTAGCAACATATACCGAATTTGTGAATGGTTAACGCACGGGGGGAGTATAGTTTCTCGATGAGTTTGGCGAGGGGAAACAAAAAGCCAGCATATAGCTAGAACATTGAAGGAAGCGTAACGCAAAAGTACTTATAGCATAACCGATAGGA]

[+] EMBL BM638904             [CCGGTTGGTGGGATCGGTTGGGTGTGCAAGAGGGAGAGAGAGAGAGAGAGCTAGTACGGAAGTAAGAAAAAGCAACAAGGACATACAAAAAAGGTTTAAAAACACGTAATATTTCGGATACTAATTATTGTTAGAGAACACTAGAAGCAGTAAACGCAAGTTGTTCGCATTCATACAGGATGGAAAATGTTCCTCGCTCGCAAAGGAACCTCTTCTTAGCGCCGTATCGCGTACGATGAAAATGAAAGAGACAGAGAGAGATAGAGAGAGAGAGAGCAAGAGAGAGTGTTTGTGGAGGTTTGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAGTAGCTAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTGAGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGTGG AATT    ATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAAGCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCCCAATCGAATGGCACGAAACTAGCAACATATACCGAAT                                                                                                                                   ]
[+] EMBL AL932441             [                                                                                                                                                                                                                                                                                                                                                                                        tcgccgagAAAG AGC AAAGGAATT  AAAGCGAAGTTGAGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGTGGAAATTAAAAATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTA TTGTCATAAAGCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCCCAATCGAATGGCACGAAACTAGCAACATATACCGAATTTGTGAATGGTTAACGCACGGGGGGAGTATAGTTTCTCGATGAGTTTGGCGAGGGGAAACAAAAAGCCAGCATATAGCTAGAACATTGAAGGAAGCGTAACGCAAAAGTACTTATAGCATAACCGATAGGA]




>consensus_4723#0
CCGGTTGGTGGGATCGGTTGGGTGTGCAAGAGGGAGAGAGAGAGAGAGAGCTAGTACGGA
AGTAAGAAAAAGCAACAAGGACATACAAAAAAGGTTTAAAAACACGTAATATTTCGGATA
CTAATTATTGTTAGAGAACACTAGAAGCAGTAAACGCAAGTTGTTCGCATTCATACAGGA
TGGAAAATGTTCCTCGCTCGCAAAGGAACCTCTTCTTAGCGCCGTATCGCGTACGATGAA
AATGAAAGAGACAGAGAGAGATAGAGAGAGAGAGAGCAAGAGAGAGTGTTTGTGGAGGTT
TGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAGTAGC
TAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTGAGCA
GCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGTGGAA
TTATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAAGCGT
TGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCCCAAT
CGAATGGCACGAAACTAGCAACATATACCGAATTTGTGAATGGTTAACGCACGGGGGGAG
TATAGTTTCTCGATGAGTTTGGCGAGGGGAAACAAAAAGCCAGCATATAGCTAGAACATT
GAAGGAAGCGTAACGCAAAAGTACTTATAGCATAACCGATAGGA

consensusID : consensus_4723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [TGCCTTCATTAAAAAACAATCATTTTAATTTTCTTTCTTTCGTCTATTTCTGTACGAGCTCCAATGAAAGTATCCAACCTCACTTTAAAACTACAAAACCCCGCTTGTCGAAAAGTCTCTCAACAGGACTTGCATTAGTTTCGAGAGCGAAAGAGAGAGAGAGAGAGAGAGAGAGGAGGAAGGAGAGAAAGAGAGAGTGTTTGTGGAGGTTTGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAGTAGCTAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTGAGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGTGGAATTATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAAGCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCCCAATCGAATGGCACCGGACGCGTGGGCGG]

[-] EMBL BM601338             [TGCCTTCATTAAAAAACAATCATTTTAATTTTCTTTCTTTCGTCTATTTCTGTACGAGCTCCAATGAAAGTATCCAACCTCACTTTAAAACTACAAAACCCCGCTTGTCGAAAAGTCTCTCAACAGGACTTGCATTAGTTTCGAGAGCGAAAGAGAGAGAGAGAGAGAGAGAGAGGAGGAAGGAGAGAAAGAGAGAGTGTTTGTGGAGGTTTGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAGTAGCTAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTGAGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGTGGAATTATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAAGCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCCCAATCGAATGGCACCGGACGCGTGGGCGG]




>consensus_4723#1
TGCCTTCATTAAAAAACAATCATTTTAATTTTCTTTCTTTCGTCTATTTCTGTACGAGCT
CCAATGAAAGTATCCAACCTCACTTTAAAACTACAAAACCCCGCTTGTCGAAAAGTCTCT
CAACAGGACTTGCATTAGTTTCGAGAGCGAAAGAGAGAGAGAGAGAGAGAGAGAGGAGGA
AGGAGAGAAAGAGAGAGTGTTTGTGGAGGTTTGCGACTAACCATGAAACAGGTGAATGTG
CGCTCGCACTCAACACGTGCTTCAGAGTAGCTAATCTAGCTAAAGACAGAAAGGAAAAGA
AGCAAAAGGAATTTAAAAGCGAAGTTGAGCAGCGCAGAAGCGTTAATTTTGGAACTGGAA
TGGGATTTTCGAAGTGATAATAGTAGTGGAATTATTTTAAGCAACAAAAAAAACCAACAC
GTTCGTTCTGTTACTAGTTGTCATAAAGCGTTGGAGAACGGTTGGATGATGATCGGATCA
TTTCTACCCTGTCGGAGGGGGTCGCCCCAATCGAATGGCACCGGACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4723#0      CCGGTTGGTGGGATCGGTTGGGTGTGCAAGAGGGAGAGAGAGAGAGAGAGCTAGTACGGA 60
consensus_4723#1      ------------------------------------------------------------
                                                                                  

consensus_4723#0      AGTAAGAAAAAGCAACAAGGACATACAAAAAAGGTTTAAAAACACGTAATATTTCGGATA 120
consensus_4723#1      ------------------------------TGCCTTCATTAAAAAACAATCATTTTAATT 30
                                                        ** *  ** *   ***  **   ** 

consensus_4723#0      CTAATTATTGTTAGAGAACACTAGAAGCAGTAAACGCAAGTTGTTCGCATTCATACAGGA 180
consensus_4723#1      TTCTTTCTT-TCGTCTATTTCTGTACGAGCTCCAATGAAAGTATCCAACCTCACTTTAAA 89
                       *  ** ** *     *   **  * *   *  *   **  * * *    ***      *

consensus_4723#0      TGGAAAATGTTCCTCGCTCGCAAAGGAACCTCTTCTTAGCGCC-GTATCGCGTACGA--- 236
consensus_4723#1      ACTACAAAA--CCCCGCTTGTCGAAAAGTCTCTCAACAGGACTTGCATTAGTTTCGAGAG 147
                         * **    ** **** *   *  *  ****    **  *  * **    * ***   

consensus_4723#0      TGAAAATGAAAGAGACAGAGAGAGATAGAGAGAGAGAGAGCAAGAGAGAGTGTTTGTGGA 296
consensus_4723#1      CGAAAGAGAGAGAGAGAGAGAGAGAGAGGAGGAAGGAGAGAAAGAGAGAGTGTTTGTGGA 207
                       ****  ** ***** ********* **   **  ***** *******************

consensus_4723#0      GGTTTGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAG 356
consensus_4723#1      GGTTTGCGACTAACCATGAAACAGGTGAATGTGCGCTCGCACTCAACACGTGCTTCAGAG 267
                      ************************************************************

consensus_4723#0      TAGCTAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTG 416
consensus_4723#1      TAGCTAATCTAGCTAAAGACAGAAAGGAAAAGAAGCAAAAGGAATTTAAAAGCGAAGTTG 327
                      ************************************************************

consensus_4723#0      AGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGT 476
consensus_4723#1      AGCAGCGCAGAAGCGTTAATTTTGGAACTGGAATGGGATTTTCGAAGTGATAATAGTAGT 387
                      ************************************************************

consensus_4723#0      GGAATTATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAA 536
consensus_4723#1      GGAATTATTTTAAGCAACAAAAAAAACCAACACGTTCGTTCTGTTACTAGTTGTCATAAA 447
                      ************************************************************

consensus_4723#0      GCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCC 596
consensus_4723#1      GCGTTGGAGAACGGTTGGATGATGATCGGATCATTTCTACCCTGTCGGAGGGGGTCGCCC 507
                      ************************************************************

consensus_4723#0      CAATCGAATGGCACGAAACTAGCAACATATACCGAATTTGTGAATGGTTAACGCACGGGG 656
consensus_4723#1      CAATCGAATGGCACCGGACGCGTGGGCGG------------------------------- 536
                      **************   **  *                                      

consensus_4723#0      GGAGTATAGTTTCTCGATGAGTTTGGCGAGGGGAAACAAAAAGCCAGCATATAGCTAGAA 716
consensus_4723#1      ------------------------------------------------------------
                                                                                  

consensus_4723#0      CATTGAAGGAAGCGTAACGCAAAAGTACTTATAGCATAACCGATAGGA 764
consensus_4723#1      ------------------------------------------------