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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1192 fasta sequence
[CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC]
[+] EMBL BM656261 [CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGCGCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCGCGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGACGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCC ]
[+] EMBL BM641977 [ ccgCTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGGGAACCGTCGCCC GGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGG CGGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAGTATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGGTGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGACAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAGCAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACCGCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAATCTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACCGAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCGGCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACCGGACTGGACGTGCAAACGC]
consensusID : consensus_4740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTTGGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCCCCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGGCTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCTCCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT]
[+] EMBL BM657331 [CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTTGGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCCCCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGGCTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCTCCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCACGATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCGGGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAGCAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACGACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCAGCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAGGACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACCGCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4740#0 ------------------------------------------------------------
consensus_4740#1 CCGGGAAACTGTAACCGAACTATAAACTAAAAGAGCGGTGTTTGTGTGTGTGTGTGTCTT 60
consensus_4740#0 ------------------------------------------------------------
consensus_4740#1 GGCACACATTTCGTCTTGGAAGAAATCGATCACACGCACATAAAATCCCCCCCCCCCCCC 120
consensus_4740#0 ------------------------------------------------------------
consensus_4740#1 CCCCTTGGGCTCAATGAGGGCTCAATGATTTAATTCCTCTAGCAGCTTTAATCCGACTGG 180
consensus_4740#0 ---------------------------CCGCCCACGCGTCCGGGAAGTGTGCTGTTGTGC 33
consensus_4740#1 CTTGTTTACTTTCGTGTTTTCACTTTTCTTTTTTTTTGCTCTTATCTCCTCCTTCTTCCT 240
* * * * ** *
consensus_4740#0 GCTGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC 93
consensus_4740#1 CCAGCTATCTCGACGGTCATGATGCGCCCCAGCACGCTGGATATCAAAACAAACTACCAC 300
* *********************************************************
consensus_4740#0 GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG 153
consensus_4740#1 GATGGATGCTACACGTTCATGAGGGACGCTTACCGTTGCTGGAAGGCACGGGCAGAGTCG 360
************************************************************
consensus_4740#0 GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG 213
consensus_4740#1 GGCGAACAACCCTACATCGCGGAATTGTTTGCCGACCTGCAGCAGTCCCTTTCGAGGAAG 420
************************************************************
consensus_4740#0 CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG 273
consensus_4740#1 CAAGTGCGGGACATTTTGTTCACGATGAAAAATGTCACACGAGCTCCGGCGATGAACACG 480
************************************************************
consensus_4740#0 ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA 333
consensus_4740#1 ACGCGTCCAAGCAGCGTGCAGACGCCGGTGGCCAACGCAACACTATCGCTATCAGCAGCA 540
************************************************************
consensus_4740#0 GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG 393
consensus_4740#1 GCAGCAGCACCATCACAACAGCAACCAAACCGGCAACATTCACCGTCCCAGCAGCGAAAG 600
************************************************************
consensus_4740#0 GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC 453
consensus_4740#1 GACAGACCGAACCGACCACCATCACCACCGGGCGAACGGTTAACGTTCGGCGAGTTCACC 660
************************************************************
consensus_4740#0 GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGTTTCATGCTATGAGGGCG 513
consensus_4740#1 GCGATAGCATCCTGTACGAAATGTTTTGGCCGACAGTCATCGT----------------- 703
*******************************************
consensus_4740#0 CGCAACGTCGACGAACTGGGCAGCGTGTTGGCAAATCACGCTGGCACGGCAAAGGACGGG 573
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 GAACCGTCGCCCGGGGCCGGAGGTGTTTCTCGGCGGTTCCTGCAATCCCACGACCTGGAC 633
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 GGGCGGACGTGGCCATACCGACGCTCGACCGGCTGGGCATATCGTTTTACAATCCGCAAG 693
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 TATCCCACTGGACACCAGATCTGATCGAGCTCGAGCATCGAGCGAAGGAAAAGGCGAAGG 753
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 TGCTGTTTTTCGTGCTCGACTCACAGACCCGCTCGACGGCGGGGGCCGTACTCCAGCAGA 813
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 CAGAAAATTCTCAATGAAACGCTATTGGAAGACGAGTATATGGATCTCATGAGCAATCAG 873
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 CAAATGCTAAGGCAACTGGTGTTGCGCCGTGGGCTACCGGTACTGGACAGTATTCCAACC 933
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 GCGCTGGAGCAGATCAAGGAAGTGCTGCTGGGGAACTGCTGCCCGCAGCCGCCAGTCAAT 993
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 CTAGCGTCACGCTTAATCTCCCTGCGACGAACGTTCGAGCGCGTTGCCGCGGATGTGACC 1053
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 GAGTCGGCCCGCATCAATCTAGCCCAGTGTCAGCAGGCCCTCGGCAGCTTAGGCTACCCG 1113
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 GCGAACGTCGGCACGATGGGCAACATTCAAAACATTCTGCTCTGCTACGAGGAGGTGACC 1173
consensus_4740#1 ------------------------------------------------------------
consensus_4740#0 GGACTGGACGTGCAAACGC 1192
consensus_4740#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||