cluster # 4746

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Anopheles gambiae
cluster # 4746 cluster # 4746 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4746#0 length = 925 sequences # 2

consensus_4746#1 length = 477 sequences # 1

consensusID : consensus_4746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 925
fasta sequence

                              [CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTTACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTCTACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCGGCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCTACGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGCTCGGTACCCAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGCGCGTTGGATGTGATATGT------GCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTACGATTTTCTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGAAAGGTGCTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGCAGCTCGCAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTAATGGCCTTTCTGGACATGC]

[+] EMBL BM577887             [CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTTACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTCTACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCGGCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCTACGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGCTCGGTACCCAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGCGCGTTGGATGTGATATGT      GCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCA                                                                                                                                                                                                                                    ]
[+] EMBL BM621929             [                                                                                                                                                                                                                                                                                                ccGCTCGGTACCCAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGCGCGTTGGATGTGATATGTGAGTCAGCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTACGATTTTCTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGAAAGGTGCTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGCAGCTCGCAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTAATGGCCTTTCTGGACATGC]




>consensus_4746#0
CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTT
ACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTC
TACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCG
GCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCTA
CGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGCTCGGTACC
CAGCTGGTGATCGTGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCCGAAG
TATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTTGCTC
ACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTTCACTTC
AAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATCAAGGTG
CTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACACTGTGC
GCGTTGGATGTGATATGTGCTATGGGAACGAAGGTGAATGCACAGATCAACTCTACTTCC
GACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTACGATTTT
CTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGAAAGGTG
CTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGCAGCTCG
CAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCATCAAGA
AGCGTAATGGCCTTTCTGGACATGC

consensusID : consensus_4746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [GCCGAGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGATGGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCATGTTCGAGGGGCACGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTGAGGCCAAAAAGCCCGAACCATATGNGGCACAGAAAAAGCTCTGTTCGANGGAGGTTGGAGGGTAGTGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGGCATCCGTATCGGCTGGTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTATTGCGGGGCTTGATTCTTGGGGAGTCCTTGGGTCGGATCCGAAGGGTGGGACNCCTCTTCCGGGGCTTGTC]

[+] EMBL AL931301             [GCCGAGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGCGATCAGGATCTGGGCATCAAGAAGCGTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGATGGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCATGTTCGAGGGGCACGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTGAGGCCAAAAAGCCCGAACCATATGNGGCACAGAAAAAGCTCTGTTCGANGGAGGTTGGAGGGTAGTGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGGCATCCGTATCGGCTGGTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTATTGCGGGGCTTGATTCTTGGGGAGTCCTTGGGTCGGATCCGAAGGGTGGGACNCCTCTTCCGGGGCTTGTC]




>consensus_4746#1
GCCGAGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGCGATCA
GGATCTGGGCATCAAGAAGCGTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGA
TGGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCATGTTCGAGG
GGCACGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTGAGGCC
AAAAAGCCCGAACCATATGNGGCACAGAAAAAGCTCTGTTCGANGGAGGTTGGAGGGTAG
TGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGGCATCCGTATCGGCTG
GTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTATTGCGGGGCTTGAT
TCTTGGGGAGTCCTTGGGTCGGATCCGAAGGGTGGGACNCCTCTTCCGGGGCTTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4746#0      CCGCGGACGCGTGGGCGTGCAACGTGCTGCAGCGTTACGCAAACAAAACAAAAAAACGTT 60
consensus_4746#1      ------------------------------------------------------------
                                                                                  

consensus_4746#0      ACGAGGATGGTGTTCTCCACGCTAGCGGTCCTGCTGGCACTGGGCAGCCTGGCCGCGGTC 120
consensus_4746#1      ------------------------------------------------------------
                                                                                  

consensus_4746#0      TACCTGTACCGGCGGTTCGGCGAGATGCTGAGGCACACCGGCAAACTGGGTGGCCCACCG 180
consensus_4746#1      --------------------------------------------------------GCCG 4
                                                                               ***

consensus_4746#0      -GCCTATCCGATCCTCGGGAATGGGTTAATGTTTCTCAACAAATCGCCCGCTGATTTTCT 239
consensus_4746#1      AGGTTTTGCAGCTCGCAGCATACAGCAAGTGGTGAACAGGAAGAGGCAAGC-GATCAGGA 63
                       *  * * *    * * * *    *  * ** *   **  **   **  ** ***     

consensus_4746#0      ACGGATCATTGGGGAGTTGATACAGCGGTACGGGGACTGCTTTCGCGTTTGGC--TCGGT 297
consensus_4746#1      TCTGGGCATCAAGAAGC--GTATGGGCTTTCTGGACATGCTGCTCCAGTCGATGATCGAT 121
                       * *  ***   * **    **  *   * * **   ****    *  * *    *** *

consensus_4746#0      ACCCAGCTGGTGATCG-TGATGGGCGATCCAAAGGATATTGAGGTACTGCTAAGCAGCCC 356
consensus_4746#1      GGGCGTCCGCTGACCGATCTCGAGATACGCGAGGAGTGTGGACACGTTCAT-----GTTC 176
                         *  * * *** ** *   * *  *  * * *  * * **     *  *     *  *

consensus_4746#0      GAAGTATATCGACAAATCGACCGAGTACGACTTCATCCGACCCTGGCTGGGCGAGGGTTT 416
consensus_4746#1      GAGGGGCA-CGATACGACGAGCGTCTGCGAGTAAAGCTATTTTTGCATGTACAGGNATTG 235
                      ** *   * *** *   *** **  * *** *  * *      **  **  *  *  ** 

consensus_4746#0      --GCTCACAAGCCGTGGCCGCAAATGGCACACCCACCGGAAGGTGATCACGCCGACGTTT 474
consensus_4746#1      AGGCCAAAAAGCCCGAACCATATGNGGCACAGAAA----AAGCTCTGTTCGANGGAGGTT 291
                        **  * *****    **  *   ******   *    *** *     **  *  * **

consensus_4746#0      CACTTCAAAATACTGGAACAGTTTGTGGAGATTTTCGATCGGCAGAGCAGCACGTTCATC 534
consensus_4746#1      GGAGG-GTAGTGTTGGGACTGGAGTTGGTGGGTCCCGGTAGNGCGGGTTCGGTGG-CATC 349
                              * *  *** ** *    *** *  *  ** * *   * *      *  ****

consensus_4746#0      AAGGTGCTGGAACCGTTTGCCGCGTCGGGCAAATCGTTCGACATCTTCCCGCAGGTGACA 594
consensus_4746#1      --CGTATCGGC-TGGTTCTCTGNGTCACCCGTTGNGCTTGNTTGCTTTNTCTCTGGGTTA 406
                         **   **    ***  * * ***   *     * * *    ***       * *  *

consensus_4746#0      CTGTGCGCGTTGGATGTGATATGTGCTATGGGAACGAAGGTGAATGCACAGATCAACTCT 654
consensus_4746#1      TTGCG-GGGCTTGATTCTTGGGGAGTCCTTGGGTCGGATCCGAAGG-GTGGGACNCCTCT 464
                       ** * * * * ***       * *   * **  ** *   *** *    *  *  ****

consensus_4746#0      ACTTCCGACTATGTGCTAGCAGTAAAGGAGATCACGAATCTCATTCAGCTGAGGTTTTAC 714
consensus_4746#1      TCCGGGGCTTGTC----------------------------------------------- 477
                       *    *  * *                                                

consensus_4746#0      GATTTTCTCATCCGGTATGACATTTTCTTCCGCCTATCCGCGAACGCTCGCAAGCAAAGA 774
consensus_4746#1      ------------------------------------------------------------
                                                                                  

consensus_4746#0      AAGGTGCTGCAGGTGCTGCACAGCTACACGGGACAGTGTGATCAAGGGGCCGGCGTCAGC 834
consensus_4746#1      ------------------------------------------------------------
                                                                                  

consensus_4746#0      AGCTCGCAAGCATACAGCAAAGTGGTGAACAGCAAGAGGCAAGCGATCAGGATCTGGGCA 894
consensus_4746#1      ------------------------------------------------------------
                                                                                  

consensus_4746#0      TCAAGAAGCGTAATGGCCTTTCTGGACATGC 925
consensus_4746#1      -------------------------------