cluster # 4752

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Anopheles gambiae
cluster # 4752 cluster # 4752 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4752#0 length = 707 sequences # 1

consensus_4752#1 length = 674 sequences # 2

consensusID : consensus_4752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence

                              [CCGAAAATATATTGCCGGTGTAGAAACGTGAAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA]

[+] EMBL BM608961             [CCGAAAATATATTGCCGGTGTAGAAACGTGAAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA]




>consensus_4752#0
CCGAAAATATATTGCCGGTGTAGAAACGTGAAGCTACTGCTGTATTTTTCGGTGCATAAA
GTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCC
ACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACA
TATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGC
TACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCT
CGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTT
CGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATC
CAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGG
TACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGAG
CTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCC
AGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAG
CTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA

consensusID : consensus_4752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGA]

[+] EMBL BM575263             [CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGA]
[+] EMBL BX603387             [                                                                                                                                                                                                                      CAAAGCTACAGCAACAGCCAATCCCCCGACGACACATCGAGGGGAATCCAGCGGCACAGAGTCGCTCGTACGCGGTAGCAGCCAGCCA                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_4752#1
CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAAAGTAATTAAAAACGTGC
TCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCCCACAGCAACTATTAGTT
CCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCACATATCCTCCTTAGTATCTTCT
CCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAGCTACAGCAACAGCCAATCCCC
CGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGCTCGTACGCGGTAGCAGCCAGC
CAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGTTCGAACAAAAAACATCGTGAC
GTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGATCCAAAGATTGAGACAGAGCTG
GCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTGGTACGCAAGCTCAAAAGTGAA
GGTGCTCCAGAAATTGACGTGAAGAAAGCGGTCAATGAGCTGAAGGCGCGCAAGAAGGTG
CTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGCCAGCTTCGATCGGGCCCGTATG
GAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAAGCTTTGCCATCTACGGTGGCATT
ACCGGCCAGTACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4752#0      CCGAAAATATATTGCCGGTGTAGAAACGTG-AAGCTACTGCTGTATTTTTCGGTGCATAA 59
consensus_4752#1      -----------------CCGCCCACGCGTCCGAGCTACTGCTGTATTTTTCGGTGCATAA 43
                                         *   *  ***   ****************************

consensus_4752#0      AGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCC 119
consensus_4752#1      AGTAATTAAAAACGTGCTCTAATTAAAAGGCCAAACCCCCCTAAGTTTGGCCCCGTCTCC 103
                      ************************************************************

consensus_4752#0      CACAGCAACTGTTGATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCAC 179
consensus_4752#1      CACAGCAACT----ATTAGTTCCTAGAGGCGGCAGCAGCCCCGGAGCAGCAGTGCGGCAC 159
                      **********    **********************************************

consensus_4752#0      ATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAG 239
consensus_4752#1      ATATCCTCCTTAGTATCTTCTCCCCGTTGCGTTCGATTAATCGTCAGTTCGTCCACAAAG 219
                      ************************************************************

consensus_4752#0      CTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGC 299
consensus_4752#1      CTACAGCAACAGCCAATCCCCCGACAACACATCGAGTGGAATCCAGCGGTACAGAGTCGC 279
                      ************************************************************

consensus_4752#0      TCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGT 359
consensus_4752#1      TCGTACGCGGTAGCAGCCAGCCAAAGCGACCCCTCATTCCGAAAGCCCTTCAATTGGGGT 339
                      ************************************************************

consensus_4752#0      TCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGAT 419
consensus_4752#1      TCGAACAAAAAACATCGTGACGTGAAGCTTCGTCTCCAGCTGTTGGAAAACATGACTGAT 399
                      ************************************************************

consensus_4752#0      CCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTG 479
consensus_4752#1      CCAAAGATTGAGACAGAGCTGGCGCCGTTGCGCGAAGCAGTTAAGGAGCAGGGCGACTTG 459
                      ************************************************************

consensus_4752#0      GTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTGGAAGAAAGCGGTCAATGA 539
consensus_4752#1      GTACGCAAGCTCAAAAGTGAAGGTGCTCCAGAAATTGACGTG-AAGAAAGCGGTCAATGA 518
                      ****************************************** *****************

consensus_4752#0      GCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGC 599
consensus_4752#1      GCTGAAGGCGCGCAAGAAGGTGCTTGAAGATCGTGAATTGAGCCTCGCTCCCCAGGTGGC 578
                      ************************************************************

consensus_4752#0      CAGCTTCGATCGGGCCCCGTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAA 659
consensus_4752#1      CAGCTTCGATCGGGCCC-GTATGGAGGATCTGCTAAAGCGACGGTTCTTCTACGACCAAA 637
                      ***************** ******************************************

consensus_4752#0      GCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGACTTTGGACCGA 707
consensus_4752#1      GCTTTGCCATCTACGGTGGCATTACCGGCCAGTACGA----------- 674
                      *************************************