cluster # 4759

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Anopheles gambiae
cluster # 4759 cluster # 4759 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4759#0 length = 687 sequences # 2

consensus_4759#1 length = 464 sequences # 1

consensusID : consensus_4759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 687
fasta sequence

                              [CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAAAAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGCCGGCGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGGGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTGATTTTTAACGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGGAAATCATTCGCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACGCGGAGGTGACGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTATCGATGTCGTTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAATAACCAGCCCGCCGTCCTTCTTGTTCGGATTGCTCT]

[+] EMBL BM608758             [CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAAAAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGCCGGCGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGGGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTGATTTTTAACGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGGAAATCATTCGCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACGCGGAGGTGACGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTATCGATGTCGTTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAATAACCAGCCCGCCGTCCTTCTTGTTCGGATTGCTCT]
[+] EMBL BM598790             [CCG CAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAAAAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGCCGGCGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTAATTTTTAACGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAA                                                                                                                                                                                                                                                                                    ]




>consensus_4759#0
CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAA
AAGCTTGCCAACCCCGACCAGCAATGAATAACATTACCGACATACACTACGGGCCACTGC
CGGCGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGGGAAGCAAA
AGTCGTGGGACCTGCTGAAGGTGCACGATTCGGTGTCGATCGTGATTTTTAACGTTACCC
GGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTG
GCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCA
CGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCG
AAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGGAAATCATTC
GCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACGCGGAGGTGA
CGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTATCGATGTCG
TTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAATAACCAGCC
CGCCGTCCTTCTTGTTCGGATTGCTCT

consensusID : consensus_4759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [GAATCGCCCGAGGTTCGCAGTAGTGCTGTGCGANGAGGACTTCATCTAAAAGCTTGGCCAACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCACTGCCGGACGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAACAGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT]

[+] EMBL AL931306             [GAATCGCCCGAGGTTCGCAGTAGTGCTGTGCGANGAGGACTTCATCTAAAAGCTTGGCCAACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCACTGCCGGACGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAAGCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAACAGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT]




>consensus_4759#1
GAATCGCCCGAGGTTCGCAGTAGTGCTGTGCGANGAGGACTTCATCTAAAAGCTTGGCCA
ACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCACTGCCGGACGGA
TTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAAGCAAAAGTCGT
GGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAACAGTTACCCGG
AAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCATCATCAGTGGC
GATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGCTTGCCGTCACA
ATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAATCGCCCGCGAA
GAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4759#0      CCGTCAAGGGCAGCATAACATGTTACCGCAGTAGTGCTGTGCGACGAGGACTTCATCTAA 60
consensus_4759#1      ---------GAATCGCCCGAGGTT--CGCAGTAGTGCTGTGCGANGAGGACTTCATCTAA 49
                               * * *     * ***  ****************** ***************

consensus_4759#0      AAGCTTG-CCAACCCCGACCAGCAATGAATAACATTACCGA-CATACA-CTACGGGCCAC 117
consensus_4759#1      AAGCTTGGCCAACCCCGACCAGCAATGAATAACATTACCGATCATACAGCTACGGGCCAC 109
                      ******* ********************************* ****** ***********

consensus_4759#0      TGCCGG-CGGATTCGCCCTACGTGAAGCCATTCCGCTTCCACTACACGCAGAACGG-GAA 175
consensus_4759#1      TGCCGGACGGATTCGCCCTACGTGAAGCCGTTCCGCTTCCACTACACGCAGAACGGTGAA 169
                      ****** ********************** ************************** ***

consensus_4759#0      GCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCG--GTGTCGATCGTGATT-TTTAA 232
consensus_4759#1      GCAAAAGTCGTGGGACCTGCTGAAGGTGCACGATTCGCGATGTCGATCGTAATTATTTAA 229
                      *************************************   ********** *** *****

consensus_4759#0      C-GTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCA 291
consensus_4759#1      CAGTTACCCGGAAGAAGCTGGTTTTCGTCAAACAGTTCCGACCTGCCGTTTACCATGGCA 289
                      * **********************************************************

consensus_4759#0      TCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGC 351
consensus_4759#1      TCATCAGTGGCGATGGGGTGGAGCCGGGCAGCATCGACATGAAGAAGTACCCGCCGGAGC 349
                      ************************************************************

consensus_4759#0      TTGCCGTCACGATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAA 411
consensus_4759#1      TTGCCGTCACAATGGAGCTGTGTGCGGGCATTATCGATAAACCGATCTCCACGATCGAAA 409
                      ********** *************************************************

consensus_4759#0      TCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCATCGAGG 471
consensus_4759#1      TCGCCCGCGAAGAAGTACTGGAAGAGTGCGGCTACGACATCCCGGTGGAGCGCAT----- 464
                      *******************************************************     

consensus_4759#0      AAATCATTCGCTATCGTTCGGGCGTCGGAACTTCCGGTGCCGAGCAGACGCTGTTCTACG 531
consensus_4759#1      ------------------------------------------------------------
                                                                                  

consensus_4759#0      CGGAGGTGACGGACGAGGACAAGATCGCTTCGGCCGGGGGCGGAGTGGACGACGAAATTA 591
consensus_4759#1      ------------------------------------------------------------
                                                                                  

consensus_4759#0      TCGATGTCGTTGAGTACGATCTGGAGGAGGCTCGAAAGCTCACCGACAAGGGGACGGTAA 651
consensus_4759#1      ------------------------------------------------------------
                                                                                  

consensus_4759#0      TAACCAGCCCGCCGTCCTTCTTGTTCGGATTGCTCT 687
consensus_4759#1      ------------------------------------