cluster # 476

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Anopheles gambiae
cluster # 476 cluster # 476 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_476#0 length = 555 sequences # 1

consensus_476#1 length = 332 sequences # 1

consensusID : consensus_476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGAAGATGAATTGTTCCCCATCTACGAGTGTGACGAACGAAGCCGAGATTGGACTACACGTTGCTTAGTACCTTTGACTAATGCACAAATGTCAGTGGACCTATGCAAGACTGGTGAGAGACACGATCAACATTTTCTGAAACGTTGCGCGAAGGAGCTGCAAATATTGGGACAGTCGTGTCCACAGCCGGTCTCAGTGTCAGATCTGGCTAAAAATATGCAGGTTCACAAACCACCACCTATGCCGTACGATTCACCAAACATGCCGAAAGTTCCAAAACAAATGTCAAAAACTAAAAAAAATAAAAAGTAAATTCGAACCGAAAAAAAAAAAAAAAAANNAAAAAAAAAAAANCTTTTTNGGGCCCCCCCGGCCCCNNTNNAACTANAAACCNCGAACCAACCTTATTCCNTTGGGGGCCCCA]

[+] EMBL CF541971             [TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGAAGATGAATTGTTCCCCATCTACGAGTGTGACGAACGAAGCCGAGATTGGACTACACGTTGCTTAGTACCTTTGACTAATGCACAAATGTCAGTGGACCTATGCAAGACTGGTGAGAGACACGATCAACATTTTCTGAAACGTTGCGCGAAGGAGCTGCAAATATTGGGACAGTCGTGTCCACAGCCGGTCTCAGTGTCAGATCTGGCTAAAAATATGCAGGTTCACAAACCACCACCTATGCCGTACGATTCACCAAACATGCCGAAAGTTCCAAAACAAATGTCAAAAACTAAAAAAAATAAAAAGTAAATTCGAACCGAAAAAAAAAAAAAAAAANNAAAAAAAAAAAANCTTTTTNGGGCCCCCCCGGCCCCNNTNNAACTANAAACCNCGAACCAACCTTATTCCNTTGGGGGCCCCA]




>consensus_476#0
TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGTTTTAGTTGTGTTAC
TTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACA
ACAATTTTCTGGAAGATGAATTGTTCCCCATCTACGAGTGTGACGAACGAAGCCGAGATT
GGACTACACGTTGCTTAGTACCTTTGACTAATGCACAAATGTCAGTGGACCTATGCAAGA
CTGGTGAGAGACACGATCAACATTTTCTGAAACGTTGCGCGAAGGAGCTGCAAATATTGG
GACAGTCGTGTCCACAGCCGGTCTCAGTGTCAGATCTGGCTAAAAATATGCAGGTTCACA
AACCACCACCTATGCCGTACGATTCACCAAACATGCCGAAAGTTCCAAAACAAATGTCAA
AAACTAAAAAAAATAAAAAGTAAATTCGAACCGAAAAAAAAAAAAAAAAANNAAAAAAAA
AAAANCTTTTTNGGGCCCCCCCGGCCCCNNTNNAACTANAAACCNCGAACCAACCTTATT
CCNTTGGGGGCCCCA

consensusID : consensus_476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [CAGATCGCCACGAGGAGGTCGCGCTTGTATGATCTNTTATGGCTGGCATAAGACTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGACGAACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACCAAATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGGAAAACCGGTTGGGCCGAAAGGNACCTGGCAAATN]

[+] EMBL BX467493             [CAGATCGCCACGAGGAGGTCGCGCTTGTATGATCTNTTATGGCTGGCATAAGACTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGACGAACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACCAAATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGGAAAACCGGTTGGGCCGAAAGGNACCTGGCAAATN]




>consensus_476#1
CAGATCGCCACGAGGAGGTCGCGCTTGTATGATCTNTTATGGCTGGCATAAGACTAGTTT
TAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAAT
CAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGACG
AACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACCAA
ATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGGAA
AACCGGTTGGGCCGAAAGGNACCTGGCAAATN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_476#0      --------------TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGT 46
consensus_476#1      CAGATCGCCACGAGGAGGTCGCGCTT-GTA-TGATCTNTTATGGCTGGCATAAGACTAGT 58
                                    *********** *** ****** ***************** ****

consensus_476#0      TTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAA 106
consensus_476#1      TTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAA 118
                     ************************************************************

consensus_476#0      ATCAAGCATGGACAACAATTTTCTGG-AAGATGAATTGTTCCCC-ATCTACG-AGTGTGA 163
consensus_476#1      ATCAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGA 178
                     ************************** ***************** ******  *******

consensus_476#0      CGAACGAAGCCGAGATTGG-ACTACACGTTGCTTAGT-ACCTTTG--ACTAAT--GCAC- 216
consensus_476#1      CGAACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACC 238
                     ******************* ***********  ** * *******  ******  **** 

consensus_476#0      AAATGTC--AGTGGACCTA--TGCAAGACTGG-TGAGA-GACACGATC-AACATTTTCTG 269
consensus_476#1      AAATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGG 298
                     *******   ********   *********** ***** ********* ********  *

consensus_476#0      AAACGTTGCGCGAAGGAGCTGCAAATATTGGGACAGTCGTGTCCACAGCCGGTCTCAGTG 329
consensus_476#1      AAA----ACCGGTTGGGCCGAAAGGNACCTGGCAAATN---------------------- 332
                     ***     *  *  **  *   *   *   **  * *                       

consensus_476#0      TCAGATCTGGCTAAAAATATGCAGGTTCACAAACCACCACCTATGCCGTACGATTCACCA 389
consensus_476#1      ------------------------------------------------------------
                                                                                 

consensus_476#0      AACATGCCGAAAGTTCCAAAACAAATGTCAAAAACTAAAAAAAATAAAAAGTAAATTCGA 449
consensus_476#1      ------------------------------------------------------------
                                                                                 

consensus_476#0      ACCGAAAAAAAAAAAAAAAAANNAAAAAAAAAAAANCTTTTTNGGGCCCCCCCGGCCCCN 509
consensus_476#1      ------------------------------------------------------------
                                                                                 

consensus_476#0      NTNNAACTANAAACCNCGAACCAACCTTATTCCNTTGGGGGCCCCA 555
consensus_476#1      ----------------------------------------------