cluster # 4781

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Anopheles gambiae
cluster # 4781 cluster # 4781 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4781#0 length = 885 sequences # 2

consensus_4781#1 length = 595 sequences # 1

consensusID : consensus_4781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 885
fasta sequence

                              [CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATCGTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTTATGGGCGGCAATACTGCCGTTGGCGGTGGTCCCGGTGGATTCGGTGGTGGCAAACGCCCTCGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTTTTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAATTTGCATACTTTTTATTGCTA-TTTTTTCATAGCAATTTTCATTAGCATCTCTATGATGTTTTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTGAATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTTACAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTATAGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAACAAAAGATCCTGAATCAGCCAAAATAATTGTTGTAACAGGTCTTGTTTCCAACATTGTCAAGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTAAGATCTTCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTGTAGTTCCAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA]

[+] EMBL BM653881             [CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATCGTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTTATGGGCGGCAATACTGCCGTTGGCGGTGGTCCCGGTGGATTCGGTGGTGGCAAACGCCCTCGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTTTTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAATTTGCATACTTTTTATTGCTA TTTTTTCATAGCAATTTTCATTAGCATCTCTATGATGTTTTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTGAATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTTACAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTATAGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAACAAAAGATCCTGAATCAGCCAAAATAAT                                                                                                                                                                                                     ]
[+] EMBL BM646808             [                                                                                                                                                                                                                                    ccgGTTTGTTTTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAATTTGCATACTTTTTATTGCTATTTTTTTCATAGCAATTCTCATTAGCATCTCTATGATGTTTTGAGCCCATTAAGGAACCGCGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTGAATTTAGCTCAAGATGGCAATGTCCC AAAAAAAAGCAACTAATATTGCTGTGTTACAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTATAGCAGCAGCGCTACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAACAAAAGATCCTGAATCAGCCAAAATAAGTGTTGTAACAGGTCTTGTTTCCAACATTGTCAAGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTAAGATCTTCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTGTAGTTCCAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA]




>consensus_4781#0
CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATC
GTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTT
ATGGGCGGCAATACTGCCGTTGGCGGTGGTCCCGGTGGATTCGGTGGTGGCAAACGCCCT
CGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTTTT
ACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTTTG
TTAAATTCTTCTACTCACAGTGCCTTCGCACGTCGTAATAGTTCTATTTCTCGTTATAAA
TTTGCATACTTTTTATTGCTATTTTTTCATAGCAATTTTCATTAGCATCTCTATGATGTT
TTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAATGTGGTGAGAGTTG
AATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTTACAGT
GTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGGTTGTAT
AGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTTTGATAA
CAAAAGATCCTGAATCAGCCAAAATAATTGTTGTAACAGGTCTTGTTTCCAACATTGTCA
AGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTAAGATCT
TCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTGTAGTTC
CAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA

consensusID : consensus_4781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [ATTGCCCGAGGTTTAGCTTGCTGCGCCGCAACCGAAGATGTGAACAAGACCACCGGGGCCGGTCCACTTATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGGCAAACTGCCCTCGCATGAATGGTCCTGCTGGTGGTTTCGGCAATGTGCCTCCCTTCAATCCTGAATGCCGGAGGCAATAACCTTAATAACAACCAAGCCATCCAGGACCTGCTGCGCCTGGCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGGTGNGCAATGTTGGTGGCAATCAGTGGCCCCAACCTGCGNGTGGCTGNGCTGTGCTGGCTGGTTCTTTCAATAATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAACAATGCCTTCGGTGGTGGTGACGGTGGCTTCGGCTGCCGGCGGCGNGCGTGCGGTGGTGGCGGCCGCAATATGAACAATCGTAATCAGAACATGAACTTCCTGCTGGTGGTAACCTGCAACAATCAGAACAACAACGTCGGTGGCAATCGAGGCCTCGGCAACAACAGCAACAACAATGCTGGTGGTAACATGA]

[+] EMBL AL930105             [ATTGCCCGAGGTTTAGCTTGCTGCGCCGCAACCGAAGATGTGAACAAGACCACCGGGGCCGGTCCACTTATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGGCAAACTGCCCTCGCATGAATGGTCCTGCTGGTGGTTTCGGCAATGTGCCTCCCTTCAATCCTGAATGCCGGAGGCAATAACCTTAATAACAACCAAGCCATCCAGGACCTGCTGCGCCTGGCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGGTGNGCAATGTTGGTGGCAATCAGTGGCCCCAACCTGCGNGTGGCTGNGCTGTGCTGGCTGGTTCTTTCAATAATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAACAATGCCTTCGGTGGTGGTGACGGTGGCTTCGGCTGCCGGCGGCGNGCGTGCGGTGGTGGCGGCCGCAATATGAACAATCGTAATCAGAACATGAACTTCCTGCTGGTGGTAACCTGCAACAATCAGAACAACAACGTCGGTGGCAATCGAGGCCTCGGCAACAACAGCAACAACAATGCTGGTGGTAACATGA]




>consensus_4781#1
ATTGCCCGAGGTTTAGCTTGCTGCGCCGCAACCGAAGATGTGAACAAGACCACCGGGGCC
GGTCCACTTATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGG
CAAACTGCCCTCGCATGAATGGTCCTGCTGGTGGTTTCGGCAATGTGCCTCCCTTCAATC
CTGAATGCCGGAGGCAATAACCTTAATAACAACCAAGCCATCCAGGACCTGCTGCGCCTG
GCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGGTGNGCAATGTT
GGTGGCAATCAGTGGCCCCAACCTGCGNGTGGCTGNGCTGTGCTGGCTGGTTCTTTCAAT
AATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAACAATGCCTTCGGTGGTGGT
GACGGTGGCTTCGGCTGCCGGCGGCGNGCGTGCGGTGGTGGCGGCCGCAATATGAACAAT
CGTAATCAGAACATGAACTTCCTGCTGGTGGTAACCTGCAACAATCAGAACAACAACGTC
GGTGGCAATCGAGGCCTCGGCAACAACAGCAACAACAATGCTGGTGGTAACATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4781#0      CCGAAGGACGTCAGCCGCCGGCTGTACAACGAGTCCGATCCTCGCATTCTGGGTACGATC 60
consensus_4781#1      ---------------------------------------------ATT----GCCCGAGG 11
                                                                   ***    *  ***  

consensus_4781#0      GTGCGCTTGCTGCGCCGCAACCCGAAGATGCTGAACAAGACCACCGGGGCCGGTCCACTT 120
consensus_4781#1      TTTAGCTTGCTGCGCCGCAACC-GAAGATG-TGAACAAGACCACCGGGGCCGGTCCACTT 69
                       *  ****************** ******* *****************************

consensus_4781#0      ATGGGCGGCAATACTGCCGTTGGC-GGTGGTCCCGGTGGATTCGGTGGTGGCAAAC-GCC 178
consensus_4781#1      ATTGGCGGCAATACTGCCGTTGGCTGGTGGTCCCGGTGGATTCGGTGGTGGCAAACTGCC 129
                      ** ********************* ******************************* ***

consensus_4781#0      CTCGCATGAATGGTCCGCCTGGTGGTAAGCTTTTCTTTCTTATCGATCTACTAGTTTGTT 238
consensus_4781#1      CTCGCATGAATGGTCCTGCTGGTGGT------------TTCGGCAATGTGCC---TCCCT 174
                      ****************  ********             *   * ** * *    *   *

consensus_4781#0      TTACTCTTCATCGCCTATATTTTCCTGTACACTTTCATAATGTAGAGATGCATTTCTGTT 298
consensus_4781#1      TCAATCCTGAATGCCGGAGG----CAATA-ACCTTAATAACAACCAAGCCATCCAGGACC 229
                      * * ** * *  ***         *  ** ** ** ****     *              

consensus_4781#0      TGTTAAATTCTTCTACTCACAGTGCCTTCGCACGTCG-TAATAGTTCTATTTCTCGTTAT 357
consensus_4781#1      TGCTGCGCCTGGCTGTTCATGTCTGGCAAGAACGTTGGCGAAAGTTTGGCCTGCCGGCGG 289
                      ** *        **  ***          * **** *   * ****     *  **    

consensus_4781#0      AAATTTGCATACTTTTTATTGCTATTTTTTCATAGCAATTTTCAT-TAGCATCTCTATGA 416
consensus_4781#1      -----TGNGCAATGTTGGTGGCAATCAGTG-GCCCCAACCTGCGNGTGGCTGNGCTGTGC 343
                           **   * * **  * ** **   *      ***  * *   * **    ** ** 

consensus_4781#0      TGTTTTGTGCCCATTAAGGAACCGTGAGAGAACGTTTACTTTTCATAAAAT-GTGGTGAG 475
consensus_4781#1      TGGCTGGTTCTT-TCAATAATGCCTGATCCTCCAATTTCTAACCAGGGGCTTGNGGCAAC 402
                      **  * ** *   * **  *  * ***     *  ** **   **     * * **  * 

consensus_4781#0      AGTTGAATTTAGCTCAAGATGGCAATGTCCCAAAAAAAAAGCAACTAATATTGCTGTGTT 535
consensus_4781#1      AAT--GCCTTCGGTGGTGGTGACGGTGGCTTCGGCTGCCGGCGGCGNGCGT-GCGGTGGT 459
                      * *     ** * *   * ** *  ** *           **  *     * ** *** *

consensus_4781#0      A-CAGTGTCATTCTTTTCCATTGCTGTATCAATTGAAAACCATCGTTTCATGTAGCTCGG 594
consensus_4781#1      GGCGGCCGCAATATGAACAATCGT-------AATCAGAACATGAACTTCCTGC----TGG 508
                        * *   ** * *   * ** *        * * * ***      *** **      **

consensus_4781#0      TTGTATAGCAGCAGCGCAACTGAAATTAGAAACGCCCTCGCTTTTAATGAAAAAGAGTTT 654
consensus_4781#1      TGGTA-ACCTGCAA--CAATCAGAAC----AACAACGTCGGTGGCAATCGA----GGCCT 557
                      * *** * * ***   ***    **     ***  * *** *   ***  *     *  *

consensus_4781#0      TGATAACAAAAGATCCTGAATCAGCCAAAATAATTGTTGTAACAGGTCTTGTTTCCAACA 714
consensus_4781#1      CGGCAACAACAG---------CAACAACAATGCTGGTGGTAACATGA------------- 595
                       *  ***** **         ** * * ***  * ** ****** *              

consensus_4781#0      TTGTCAAGCATCCCTGACCCAATCATTGATCGTGTTGATCCCAGCACGAATTCCTGGGTA 774
consensus_4781#1      ------------------------------------------------------------
                                                                                  

consensus_4781#0      AGATCTTCTGTCATTGATATCTGTTTGCCAATTCTTACCCTGATTCATGTTGTGCTTCTG 834
consensus_4781#1      ------------------------------------------------------------
                                                                                  

consensus_4781#0      TAGTTCCAGTGTCCCATGAATGCGCATGAATTTCTTTTTAACATGCTTGTA 885
consensus_4781#1      ---------------------------------------------------