cluster # 4784

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Anopheles gambiae
cluster # 4784 cluster # 4784 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4784#0 length = 715 sequences # 2

consensus_4784#1 length = 497 sequences # 1

consensusID : consensus_4784#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence

                              [AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTCGTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCATTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCCAAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGGCAGCTTAAAAGTGTGTTNACTGTTTTACTGGACTTAACTGACTTTGTTGCAACAGAAAACCATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAACGGAATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCG-CGCCGNCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCGTCGTATTATATCAAACTCAGTCGCGT]

[+] EMBL AL932019             [AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTCGTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCATTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCCAAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGGCAGCTTAAAAGTGTGTTNACTGTTTTACTGGACTTAACTGACTTTGTTGCAACAGAAAACCATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAACGGAATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCG CGCCGN                                                                                                                                  ]
[+] EMBL BM643435             [                                                                                                                                    ccgGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCCAAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGGCAGCTTAAAAGTGTGTT A TGTTTTACTGGACTTAACTGA TTTG TGCAACAGAAAACCATGTGAATAACACTTAACTTATAAAAAA GAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAA GGAATAAAGTAATAAGGGGGGTCG TCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCGCCGCCGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCGTCGTATTATATCAAACTCAGTCGCGT]




>consensus_4784#0
AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTC
GTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCA
TTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCC
AAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGG
CAGCTTAAAAGTGTGTTNACTGTTTTACTGGACTTAACTGACTTTGTTGCAACAGAAAAC
CATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCTATATCG
GATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAA
GTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAACGG
AATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTCGGGTAA
AACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCGCGCCGNCGCCGCCACCGTGTT
CGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGT
TCGTATTCGTCGCGTTCGCGTATTTATCGTCGTATTATATCAAACTCAGTCGCGT

consensusID : consensus_4784#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [CCGCGGAGTACGATCAATGTAGCCCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGAACTTAACTGATTTGTGCAACAGAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAAGGAATTAAGTAATAAGGGGTCTCCCGTCGTCGTAAACGTGAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGCCGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATATCAAACTCCGTCGCGGTA]

[+] EMBL BM619884             [CCGCGGAGTACGATCAATGTAGCCCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGAACTTAACTGATTTGTGCAACAGAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAAAACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAAAACGAAAGCAACATACAAACAAACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAATAAGGAATTAAGTAATAAGGGGTCTCCCGTCGTCGTAAACGTGAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGCCGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATATCAAACTCCGTCGCGGTA]




>consensus_4784#1
CCGCGGAGTACGATCAATGTAGCCCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGA
ACTTAACTGATTTGTGCAACAGAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAA
AACACACACAACCAAAAAGCTATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAA
AACGAAAGCAACATACAAACAAACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTC
GTCAGTCGCGTAATAAACTAATAAGGAATTAAGTAATAAGGGGTCTCCCGTCGTCGTAAA
CGTGAAACAAATTCGGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGC
CGCCGCCGCCACCGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGT
CGTGGTCGTCGTCATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATAT
CAAACTCCGTCGCGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4784#0      AGAATCGCCCGAGGTTTGATGTGAACAACACATATACCGATCAAAATGTGGAACAAAGTC 60
consensus_4784#1      ------------------------------------------------------------
                                                                                  

consensus_4784#0      GTACGCGCACACACACACACACATGCCTCTCCAAAGGCAGTCGTTCGTCCCCTTCGATCA 120
consensus_4784#1      ------------------------------------------------------------
                                                                                  

consensus_4784#0      TTGTTGTGTGATAGTGTGCATACAAAATCAAAACCGTTCGTTTTTCTTTCTTCAATGCCC 180
consensus_4784#1      ------------------------------------------------------------
                                                                                  

consensus_4784#0      AAAAAATGGCCAAACAAATACTCGTTTAAAAGTGTGTGTGTGTGTATGTGCAATTGTAGG 240
consensus_4784#1      -----------------------------------CCGCG-GAGTACGATCAAT-GTAGC 23
                                                           * * * *** *  **** **** 

consensus_4784#0      CAG--CTTAAAAGTGTGTTN-ACT---GTTTTACTGGACTTAACTGACTTTGTTGCAACA 294
consensus_4784#1      CCGGCCTTAAAAGTGTGTTATACTTATGTTTTACTGAACTTAACTGATTT--GTGCAACA 81
                      * *  **************  ***   ********* ********** **   *******

consensus_4784#0      GAAAACCATGTGAATAACACTTAACTTATAAAAAACGAAAACACACACAACCAAAAAGCT 354
consensus_4784#1      GAAAACCATGTGAATAACATTTAACTTGTAACAAAAGAAAACACACACAACCAAAAAGCT 141
                      ******************* ******* *** *** ************************

consensus_4784#0      ATATCGGATCGTCGTTCCTCTCAGACAACCAATAGACAAAACGAAAGCAACATACAAACA 414
consensus_4784#1      ATATCGGATCGTCGTTCCTCTCAGATAACCAATAGACAAAACGAAAGCAACATACAAACA 201
                      ************************* **********************************

consensus_4784#0      AACAAAGTAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAA 474
consensus_4784#1      AACAAAGCAAAAAGGTGCAACTAATCCTCTCGTCGGTTCGTCAGTCGCGTAATAAACTAA 261
                      ******* ****************************************************

consensus_4784#0      TAACGGAATAAAGTAATAAGGGGGGTCGATCTCTCGTCGCCGTAAACGTTAAACAAATTC 534
consensus_4784#1      TAA-GGAATTAAGTAATAAGGGG------TCTCCCGTCGTCGTAAACGTGAAACAAATTC 314
                      *** ***** *************      **** ***** ********* **********

consensus_4784#0      GGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGTCGCCGCGCCGNCGCCGCCAC 594
consensus_4784#1      GGGTAAAACTCGCGTAAATCTCGCACCATCCGTTATTCGCCGCCGC--CGCCGCCGCCAC 372
                      *************************************** ******  ** *********

consensus_4784#0      CGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGT 654
consensus_4784#1      CGTGTTCGTCGTGTAAATCCGTGTGATCGTTCTCCGTCTTTCCGCCGTCGTGGTCGTCGT 432
                      ************************************************************

consensus_4784#0      CATCGTTCGTATTCGTCGCGTTCGCGTATTTATC--GTCGTATTATATCAAACTCAGTCG 712
consensus_4784#1      CATCGTTCGTATTCGTCGCGTTCGCGTATTTATCTCGTCGTATTATATCAAACTCCGTCG 492
                      **********************************  ******************* ****

consensus_4784#0      CGT-- 715
consensus_4784#1      CGGTA 497
                      **