cluster # 4786

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Anopheles gambiae
cluster # 4786 cluster # 4786 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4786#0 length = 984 sequences # 2

consensus_4786#1 length = 512 sequences # 1

consensusID : consensus_4786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 984
fasta sequence

                              [TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTTGCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAGTGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTTTCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCCTGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGCAATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACGGGGTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGCAATAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAAGGAACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAAAGCGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAGAAACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAATGGTAATTTATCTGCTTTACCTCAAT]

[+] EMBL BX609076             [TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTTGCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAGTGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTTTCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCCTGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGCAATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCG                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX617147             [                                                                                                                                                                                                                                                                                                                                                                            CAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGCAATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACGGGGTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGCAATAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAAGGAACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAAAGCGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAGAAACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAATGGTAATTTATCTGCTTTACCTCAAT]




>consensus_4786#0
TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTT
GCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAG
TGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTT
TCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCC
TGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTG
GAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCA
AAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGC
AATCGTTGGAGGGCGATCAAACGATCGCACGGCGCCTAACGCGCGAGCGGAAGTTAATTT
TTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGC
AACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTT
GTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACGGG
GTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGCAA
TAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAAGG
AACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAAAG
CGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAGAA
ACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAATG
GTAATTTATCTGCTTTACCTCAAT

consensusID : consensus_4786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCCGCCGATGCGCTACTTTTCAGAGGGATCCGACGATGACAGTATCGCCTCGTCGCAGCACACTATGCGCCATTCGCTAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAGCGGCCAATGGACCGTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGCAATCGTTGGAGGACGATCAAACGATCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACA]

[+] EMBL BX603435             [TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCCGCCGATGCGCTACTTTTCAGAGGGATCCGACGATGACAGTATCGCCTCGTCGCAGCACACTATGCGCCATTCGCTAGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAGCGGCCAATGGACCGTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGCAATCGTTGGAGGACGATCAAACGATCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACA]




>consensus_4786#1
TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCCGCCGATGCGCTACTT
TTCAGAGGGATCCGACGATGACAGTATCGCCTCGTCGCAGCACACTATGCGCCATTCGCT
AGACTTTGACGAGATGCACATGACAACGCATGAGTGGAGCGAAAAGGATAATACTCAATG
GCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCAAAACCAATGAGCGGCCAATGGACC
GTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGCAATCGTTGGAGGACGATCAAACGA
TCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAATTTTTAGTGTATCACTAAGGATAAA
ACACAATTTCAGACAGCTCTATTACCTTATCGCATTGCAACACACATTGTCATTAGCGTT
ACACATTAGCGCGTACGGATACTTAAGGCTTTGTTTTTGTTGTTTGTATTTTACATGTAT
TGTACCTATTTTTTAACGTGTTTCCCTTCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4786#0      TAACACAACTAGATAGCATAACTAACCAACTAATACGTCTCATATTTGGCAACCAAATTT 60
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      GCAATGAGCCCCGAACGAGAGGCCACAAGCACCTAGACTCTTCGTGTTAGACGTTTTAAG 120
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      TGTTTCCCTTTCGACTCCTTACTGCACAGTTTTTACTTTGTCTCATTTCGTCTGCATGTT 180
consensus_4786#1      ---------------TGCGCACTACGAAGGACATCTTCCGCCCGGCGTCGTACATAAGCC 45
                                     * *  *** *  **    *  *  * *     ****    * *  

consensus_4786#0      TCCTCCGAAAAACTTGCAGCAAATAAAACACTTCTCGTGCAAGGTTTTCATTGTGGTCCC 240
consensus_4786#1      GCCGATGCGCTACTTTT------CAGAGGGATCCGACGATGACAGTATCGCC-TCGTCGC 98
                       **   *    ****         * *    * *       *   * **    * *** *

consensus_4786#0      TGTGTTTTACCCCCTTTCCTTTGCAGACTTTGACGAGATGCACATGACAACGCATGAGTG 300
consensus_4786#1      AGCACACTATGCGCCATTCGCT--AGACTTTGACGAGATGCACATGACAACGCATGAGTG 156
                       *     **  * *  * *  *  ************************************

consensus_4786#0      GAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCA 360
consensus_4786#1      GAGCGAAAAGGATAATACTCAATGGCAGGAACAGTTTGCTGCCTGGAGCCTTAACTCGCA 216
                      ************************************************************

consensus_4786#0      AAACCAATGAACGGCGAACGGACCGTGCAATGCAAGCAGTAAATGAAGGGCGTTACAAGC 420
consensus_4786#1      AAACCAATGAGCGGCCAATGGACCGTGCAATACAAGCAGCAAATGAAGGGCGCTACAAGC 276
                      ********** **** ** ************ ******* ************ *******

consensus_4786#0      AATCGTTGGAGGGCGATCAAACGATCGCACGGC--GCCTAACGCGCGAGCGGAAGTTAAT 478
consensus_4786#1      AATCGTTGGAGGACGATCAAACGATCGCACGGCACGCCTAACGTGCGAGCGGAAGTTAAT 336
                      ************ ********************  ******** ****************

consensus_4786#0      TTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATT 538
consensus_4786#1      TTTTAGTGTATCACTAAGGATAAAACACAATTTCAGACAGCTCTATTACCTTATCGCATT 396
                      ************************************************************

consensus_4786#0      GCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTT 598
consensus_4786#1      GCAACACACATTGTCATTAGCGTTACACATTAGCGCGTACGGATACTTAAGGCTTTGTTT 456
                      ************************************************************

consensus_4786#0      TTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACAAACG 658
consensus_4786#1      TTGTTGTTTGTATTTTACATGTATTGTACCTATTTTTTAACGTGTTTCCCTTCACA---- 512
                      ********************************************************    

consensus_4786#0      GGGTGGTTTTACAGAAGCGTATAAGAACAAACAAGAAGCGAATACTGATCTGTTTGAAGC 718
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      AATAATGCAAAAGCGCAACACATGCATTCCAGGCATAAGATAAGATCATGCAAATGGAAA 778
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      GGAACACATTTTTAGTGATACAAGACGAACAGGTCTTGTTAGGGTTAGCATTGTTACGAA 838
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      AGCGTTTTATGGACTTGAAGCAAGCTCTAGATGCAGCCACAGCCTCTTGCCAGAACTAAG 898
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      AAACATCTTTGATTTCAATCACTCTATTCAACGGTACCCAGTTAGCGGTAGGTTTAAAAA 958
consensus_4786#1      ------------------------------------------------------------
                                                                                  

consensus_4786#0      TGGTAATTTATCTGCTTTACCTCAAT 984
consensus_4786#1      --------------------------