cluster # 4791

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Anopheles gambiae
cluster # 4791 cluster # 4791 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4791#0 length = 684 sequences # 2

consensus_4791#1 length = 550 sequences # 1

consensusID : consensus_4791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence

                              [GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAGCAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACGTAGGCCAACTAACATACCTGTGTGTGTGTGCGTGCGTGTGTGGGAAGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCAGGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGTGTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAGGTGACGGAATCGGGCGGATTGTGTGTGTGTGTGTGTGAGTGAGCTGGCACTGTAGCTCCCCACTCCAGCTGGCAAGGGAAGGAAAACAATCCCAAAG]

[+] EMBL BM619522             [GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAGCAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACGTAGGCCAACTAACATACCTGTGTGTGTGTGCGTGCGTGTGTGGGAAGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCAGGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGTGTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAG                                                                                                 ]
[+] EMBL BM575545             [                                                         ccgCGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTATTGAGGGTGAGTGGAAGAAGAAAAAAAAACAAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCAGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACACTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAGCAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACGTAGGCCAACTAACATACCTGTGTGTGTGTGCGTGAGTGTGTGGGAGGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCACGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGCGTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAGGTGACGGAATCGGGCGGATTGTGTGTGTGTGTGTGTGAGTGAGCTGGCACTGTAGCTCCCCACTCCAGCTGGCAAGGGAAGGAAAACAATCCCAAAG]




>consensus_4791#0
GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCA
CGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGA
AGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCA
TTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAA
TCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCA
AAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAG
CAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACG
TAGGCCAACTAACATACCTGTGTGTGTGTGCGTGCGTGTGTGGGAAGAGAAAGAAGCGAA
AAGGAGCGAGGAGGCCCAGGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGT
GTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAGGTGACGGAATCGG
GCGGATTGTGTGTGTGTGTGTGTGAGTGAGCTGGCACTGTAGCTCCCCACTCCAGCTGGC
AAGGGAAGGAAAACAATCCCAAAG

consensusID : consensus_4791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGCTGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACCCTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCACACGCACGCACACACGCACACGCCGACACACACG]

[+] EMBL AL930701             [GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGCTGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACCCTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCACACGCACGCACACACGCACACGCCGACACACACG]




>consensus_4791#1
GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACC
CATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCG
TGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTG
CAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTT
ACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCT
GCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTC
GCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGC
TGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACC
CTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCACACGCACGCACACACGCACACGCC
GACACACACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4791#0      ----------------------GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACC 38
consensus_4791#1      GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACC 60
                                              ***   * * * ************************

consensus_4791#0      CATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCG 98
consensus_4791#1      CATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCG 120
                      ************************************************************

consensus_4791#0      TGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTG 158
consensus_4791#1      TGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTG 180
                      ************************************************************

consensus_4791#0      CAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTT 218
consensus_4791#1      CAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTT 240
                      ************************************************************

consensus_4791#0      ACCGGGG-ATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCT 277
consensus_4791#1      ACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCT 300
                      ******* ****************************************************

consensus_4791#0      GCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTC 337
consensus_4791#1      GCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTC 360
                      ************************************************************

consensus_4791#0      GCGTGGGGTTCAGT-GGCCGACAGCAGCAA-ACCGCGGGCAA-GGGGGTGTGTGGCAGGC 394
consensus_4791#1      GCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGC 420
                      *************  **************  *********** *****************

consensus_4791#0      TGTTCCCCAT---ACATTTGGAACCCACGTAGGCC-AACTAACATACCTGTGTGTGTGTG 450
consensus_4791#1      TGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACC 480
                      *********    **  ***  ** * *  * *** * *   ** ***        *   

consensus_4791#0      CGTGCG-TGTGTGGGAAGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCAGGAAGAAAGTG 509
consensus_4791#1      CTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCA-CACGCACGCACAC-ACGCACACG 538
                      *    * ****** *        *  **     * * *  * * ** **  * * *   *

consensus_4791#0      TCGCCTTTTTCTTCTTTTCTTTCGGCGTTGTGTGGTACGATTAGGTAAAGCTGGTGAGGC 569
consensus_4791#1      CCGACACACACG------------------------------------------------ 550
                       ** *     *                                                 

consensus_4791#0      AATGCAAAGTAACGCTAGGTGACGGAATCGGGCGGATTGTGTGTGTGTGTGTGTGAGTGA 629
consensus_4791#1      ------------------------------------------------------------
                                                                                  

consensus_4791#0      GCTGGCACTGTAGCTCCCCACTCCAGCTGGCAAGGGAAGGAAAACAATCCCAAAG 684
consensus_4791#1      -------------------------------------------------------