cluster # 4800

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Anopheles gambiae
cluster # 4800 cluster # 4800 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4800#0 length = 657 sequences # 1

consensus_4800#1 length = 642 sequences # 2

consensusID : consensus_4800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGCCCACGCGTCCGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAGCCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGAAGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTGTGCATTGCCAAGAGAACCACAACTACAAACGAAACACCCCCCCCCCCCCCCTTACCAAACAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTGTAGTCGCGAAGGAGGAGAATGGGGTGTGGAGGTGGCGGAGCGAATGAAAAGGGAAGAACTAAACGGTGCGTACACCAAACACACACACACACACACACAGATAATCTCAGTAAACACACGGAACCCGATCAGCATTTTTGCCGCGCGCCCACCCACAAACCAACGTGCGTGCGGTCGCCACCTACTGCGCATTTTGCCGCCATCGCATTGCCCACACGCTCTCTGTGTGCGCGTGTGTGTATGTGCACAGTGGGCATTTGTTTGTTTGTTTGTTTGATTGTTTTATGTTTTAGCTTTTAAAGACAGCACGCGTGTGCTAACTTCCAGAAACAGTATATTTTCAGCTGGTCAGCTAATCAATCTCA]

[+] EMBL BM651469             [CCGCCCACGCGTCCGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAGCCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGAAGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTGTGCATTGCCAAGAGAACCACAACTACAAACGAAACACCCCCCCCCCCCCCCTTACCAAACAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTGTAGTCGCGAAGGAGGAGAATGGGGTGTGGAGGTGGCGGAGCGAATGAAAAGGGAAGAACTAAACGGTGCGTACACCAAACACACACACACACACACACAGATAATCTCAGTAAACACACGGAACCCGATCAGCATTTTTGCCGCGCGCCCACCCACAAACCAACGTGCGTGCGGTCGCCACCTACTGCGCATTTTGCCGCCATCGCATTGCCCACACGCTCTCTGTGTGCGCGTGTGTGTATGTGCACAGTGGGCATTTGTTTGTTTGTTTGTTTGATTGTTTTATGTTTTAGCTTTTAAAGACAGCACGCGTGTGCTAACTTCCAGAAACAGTATATTTTCAGCTGGTCAGCTAATCAATCTCA]




>consensus_4800#0
CCGCCCACGCGTCCGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAGCCCACTA
GTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGAAGAAAAT
CTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTGTGCATTG
CCAAGAGAACCACAACTACAAACGAAACACCCCCCCCCCCCCCCTTACCAAACAAACCAT
AGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTGTAGTCGCG
AAGGAGGAGAATGGGGTGTGGAGGTGGCGGAGCGAATGAAAAGGGAAGAACTAAACGGTG
CGTACACCAAACACACACACACACACACACAGATAATCTCAGTAAACACACGGAACCCGA
TCAGCATTTTTGCCGCGCGCCCACCCACAAACCAACGTGCGTGCGGTCGCCACCTACTGC
GCATTTTGCCGCCATCGCATTGCCCACACGCTCTCTGTGTGCGCGTGTGTGTATGTGCAC
AGTGGGCATTTGTTTGTTTGTTTGTTTGATTGTTTTATGTTTTAGCTTTTAAAGACAGCA
CGCGTGTGCTAACTTCCAGAAACAGTATATTTTCAGCTGGTCAGCTAATCAATCTCA

consensusID : consensus_4800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 642
fasta sequence

                              [CCGCCCACGCGTCCGTGGATGTGTATGTGTATGTTTTATTGAGGGAGTTCATTTTTTTATTGCAAAAAAAACCCGCAGCGATAGATGTTAAGGCAAGCACACATAACAAACACACACACATACACACAGCTACGCAAAAAAGAGAAACAAAAAATGGAACAGGTCACAGGGGGAACAAACGAGGTATTGTGATTTTACAGCTTTTTTAATATTAAGGGCAGGGTTTAGTGTTTAGGTTTTTGGTCAGCATTTTGGGCCCCACAACAGCCCAACACTAACGGACGGTGCATAATTTGTAGCATTGCATAGCGTGCAGTGTGGGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAGCCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGAAGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTGTGCATTGCCAAGAGAACCACAATCCCAAACCGAAACACCCCCCCCCCCCCCCTTACCAAACAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTGTAGTCGCGAAGGAAGAAAATGGGGTGTGGAGGTGGCGGAACC]

[+] EMBL BM601591             [CCGCCCACGCGTCCGTGGATGTGTATGTGTATGTTTTATTGAGGGAGTTCATTTTTTTATTGCAAAAAAAACCCGCAGCGATAGATGTTAAGGCAAGCACACATAACAAACACACACACATACACACAGCTACGCAAAAAAGAGAAACAAAAAATGGAACAGGTCACAGGGGGAACAAACGAGGTATTGTGATTTTACAGCTTTTTTAATATTAAGGGCAGGGTTTAGTGTTTAGGTTTTTGGTCAGCATTTTGGGCCCCACAACAGCCCAACACTAACGGACGGTGCATAATTTGTAGCATTGCATAGCGTGCAGTGTGGGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAGCCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGAAGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTGTGCATTGCCAAGAGAACCACAATCCCAAACCGAAACACCCCCCCCCCCCCCCTTACCAAACAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTGTAGTCGCGAAGGAAGAAAATGGGGTGTGGAGGTGGCGGAACC]
[+] EMBL BM584045             [                                                                                                                                            AGAGAAACAAAAAATGGAACAGGTCACAGGGGGAACAAACGAGGTATTGTGATTTTACAGCTTTTTTAATATTAAGGACAGGGTTTAGTGTTTAGGTTTTTGGTCAGCATTTTGGGCCCCACAACAGCCCAACACTAATGGACGGTGCATAATTTGTAGCGTTGCATAGCGTGCAGTGTGGGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAGCCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGGGGAAAAAACGGAATCAGAAGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTG                                                                                                                                                                      ]




>consensus_4800#1
CCGCCCACGCGTCCGTGGATGTGTATGTGTATGTTTTATTGAGGGAGTTCATTTTTTTAT
TGCAAAAAAAACCCGCAGCGATAGATGTTAAGGCAAGCACACATAACAAACACACACACA
TACACACAGCTACGCAAAAAAGAGAAACAAAAAATGGAACAGGTCACAGGGGGAACAAAC
GAGGTATTGTGATTTTACAGCTTTTTTAATATTAAGGGCAGGGTTTAGTGTTTAGGTTTT
TGGTCAGCATTTTGGGCCCCACAACAGCCCAACACTAACGGACGGTGCATAATTTGTAGC
ATTGCATAGCGTGCAGTGTGGGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAG
CCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGA
AGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTG
TGCATTGCCAAGAGAACCACAATCCCAAACCGAAACACCCCCCCCCCCCCCCTTACCAAA
CAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTG
TAGTCGCGAAGGAAGAAAATGGGGTGTGGAGGTGGCGGAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4800#0      ------------------------------------------------------------
consensus_4800#1      CCGCCCACGCGTCCGTGGATGTGTATGTGTATGTTTTATTGAGGGAGTTCATTTTTTTAT 60
                                                                                  

consensus_4800#0      ------------------------------------------------------------
consensus_4800#1      TGCAAAAAAAACCCGCAGCGATAGATGTTAAGGCAAGCACACATAACAAACACACACACA 120
                                                                                  

consensus_4800#0      ------------------------------------------------------------
consensus_4800#1      TACACACAGCTACGCAAAAAAGAGAAACAAAAAATGGAACAGGTCACAGGGGGAACAAAC 180
                                                                                  

consensus_4800#0      ------------------------------------------------------------
consensus_4800#1      GAGGTATTGTGATTTTACAGCTTTTTTAATATTAAGGGCAGGGTTTAGTGTTTAGGTTTT 240
                                                                                  

consensus_4800#0      ------------------------------------------------------------
consensus_4800#1      TGGTCAGCATTTTGGGCCCCACAACAGCCCAACACTAACGGACGGTGCATAATTTGTAGC 300
                                                                                  

consensus_4800#0      ------CCGCCCAC-GCGTCCGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAG 53
consensus_4800#1      ATTGCATAGCGTGCAGTGTGGGGGCATGGTTTCGCTCCCACTCCACTCTACCCGCGCCAG 360
                              **   * * **  ***************************************

consensus_4800#0      CCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGA 113
consensus_4800#1      CCCACTAGTGCTCCCCTTCCAACTCTACATGGCCAAAAAGGTGGAAAAAACGGAATCAGA 420
                      ************************************************************

consensus_4800#0      AGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTG 173
consensus_4800#1      AGAAAATCTGCACAGCTTTTTACGTGATTGCCAATCGTTTTAGTATAGCTAGGGTGCCTG 480
                      ************************************************************

consensus_4800#0      TGCATTGCCAAGAGAACCACAACTACAAAC-GAAACACCCCCCCCCCCCCCCTTACCAAA 232
consensus_4800#1      TGCATTGCCAAGAGAACCACAATCCCAAACCGAAACACCCCCCCCCCCCCCCTTACCAAA 540
                      **********************   ***** *****************************

consensus_4800#0      CAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTG 292
consensus_4800#1      CAAACCATAGCGAGTAGACGAAAACCCCCAGGTTGCACATTCCGCGACGCGTTTGTTCTG 600
                      ************************************************************

consensus_4800#0      TAGTCGCGAAGGAGGAGAATGGGGTGTGGAGGTGGCGGAGCGAATGAAAAGGGAAGAACT 352
consensus_4800#1      TAGTCGCGAAGGAAGAAAATGGGGTGTGGAGGTGGCGGAACC------------------ 642
                      ************* ** ********************** *                   

consensus_4800#0      AAACGGTGCGTACACCAAACACACACACACACACACACAGATAATCTCAGTAAACACACG 412
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      GAACCCGATCAGCATTTTTGCCGCGCGCCCACCCACAAACCAACGTGCGTGCGGTCGCCA 472
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      CCTACTGCGCATTTTGCCGCCATCGCATTGCCCACACGCTCTCTGTGTGCGCGTGTGTGT 532
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      ATGTGCACAGTGGGCATTTGTTTGTTTGTTTGTTTGATTGTTTTATGTTTTAGCTTTTAA 592
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      AGACAGCACGCGTGTGCTAACTTCCAGAAACAGTATATTTTCAGCTGGTCAGCTAATCAA 652
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      TCTCA 657
consensus_4800#1      -----