|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 901 fasta sequence
[AATGGCGGATAGTTTCTTCAAAGCGGTGATTCGTGATCCCAAGTGGGACGTGCGGTCGGAAGCGAAACGCTTGGGCTTTCTGTTTCAATTGTATATCGATTCGAAAAAGCCGACGGAAGTGTTTATCAAGTACAAAACCGCCAAAGAGGCGGCGAAGGCACGGGCAAGCTTAGCGCAAAATGAGAATGTGTTGCGCGTTGAATCGATGGACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCTGCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAACTCTGCTGCATCGAACCACATGCTACCGCCGATGCCGATGCAGATGCCAATGCAGATGCCAATGCAGATGCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCTGCGTGCCGGAACAGTGGCGCCTCGTTCCAGTGCTTTGTTTGTGGCATATTCTACTGCGGCGACCAATGCCAAAGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGCAACGAATCCGTTTGTGGCGGCCAATGTACCACAAAGGAGCATGCCCTTAGCCTTCAACGGAATGTTCCCCGGGGCGGGCAACAACAATTGGTACGAGAATAAAGAAAATGCACAACATTACGCGCCGCCGCACCCGAATGGCCCAGTGGCGGGTAGCTCCAAACAACAGGCTGGTACATCGAAACAACCGGCCCAGCAGCCGAAACCCGTCCCGACTGCCACCCCGAAGGAATCGCCACCCTGTAATGTACCCACCAACGTGCTCAAAAGTATGGGCATGAAACGTCACCAGGACCAGGCCGACCAATCGAACAGTGTGGTGAGTGGTGTATCGAGCGCC]
[+] EMBL CNS09R1I [AATGGCGGATAGTTTCTTCAAAGCGGTGATTCGTGATCCCAAGTGGGACGTGCGGTCGGAAGCGAAACGCTTGGGCTTTCTGTTTCAATTGTATATCGATTCGAAAAAGCCGACGGAAGTGTTTATCAAGTACAAAACCGCCAAAGAGGCGGCGAAGGCACGGGCAAGCTTAGCGCAAAATGAGAATGTGTTGCGCGTTGAATCGATGGACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCTGCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAACTCTGCTGCATCGAACCACATGCTACCGCCGATGCCGATGCAGATGCCAATGCAGATGCCAATGCAGATGCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCTGCGTGCCGGAACAGTGGCGCCTCGTTCCAGTGCTTTGTTTGTGGCATATTCTACTGCGGCGACCAATGCCAAAGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGCAACGAATCCGTTTGTGGCGGCCAATGTACCACAAAGGAGCATGCCCTTAGCCTTCAACGGAATGTTCCCCGGGGCGGGCAACAACAATTGGTACGAGAATAAAGAAAATGCACAACATTACGCGCCGCCGCACCCGAATGGCCCAGTGGCGGGTAGCTCCAAACAACAGGCTGGTACAT ]
[+] EMBL BM590553 [ ccgAAAATGAGAATGTGTTGCGCGTTGAATCGATGGACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCTGCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAACTCTGCTGCATCGAACCACATGCCACCGCCGATGCCGATGCAGATGCCAATGCAGATGCCAATGCAGATGCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCCGCGTGCCGGAACAGTGGCGCCTCGTTCCAGTGCTTTGTTTGTGGCATATTCTACTGCGGCGACCAATGCCAAAGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGCAACGAATCCGTTTGTGGCGGCCAATGTACCACAAAGGAGCATGCCCTTACCCTTCAACGGAATGTTCCCCGGGGCGGGCAACAACAACTGGTACGAAAATAAAGAAAATGCACAACATTACGCGCCGCCGCACTCGAATGGCCCAGTGGCAGGCAGCTCCAAACAACAGCCTGGTACATCGAAACAACCGGCCCAGCAGCCGAAACCCGTCCCGACTGCCACCCCGAAGGAATCGCCACCCTGTAATGTACCCACCAACGTGCTCAAAAGTATGGGCATGAAACGTCACCAGGACCAGGCCGACCAATCGAACAGTGTGGTGAGTGGTGTATCGAGCGCC]
consensusID : consensus_4803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCGGGAAGCTGCGGAATAGCAACGCCGGCCCAATACAGCTGAGTTTTGTGTTTTATTGTTTAACAGCTCCGTTTAACCTTGAGCAGCCAGATAATGGCGGATAGTTTCTTCAAAGCGGTGATTCGTGATCCCAAGTGGGACGTGCGGTCGGAAGCCAAACGCTTGGGCTTTCTGTTTCAATTGTACATCGATTCGAAAAAGCCGACGGAAGTGTTTATCAAGTACAAAACCGCCAAGGAGGCGGCGAAGGCACGGGCAAGCTTAGCGCAAAATGAGAATGTGTTGCGCGTTGAATCGATGGACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCTGCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAATTCTGCTGCATCGAACCACATGCCACCGCCGATGCCGATGCAGATGCCAATGCAGATGCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCCGCGTGCCGGAACAGTGGCGCCTCGTTCCAGTGCTTTGTATGTGGCATATTCTACTGCGGCGACCAATGCCAAAGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGC]
[+] EMBL BM633848 [CCGGGAAGCTGCGGAATAGCAACGCCGGCCCAATACAGCTGAGTTTTGTGTTTTATTGTTTAACAGCTCCGTTTAACCTTGAGCAGCCAGATAATGGCGGATAGTTTCTTCAAAGCGGTGATTCGTGATCCCAAGTGGGACGTGCGGTCGGAAGCCAAACGCTTGGGCTTTCTGTTTCAATTGTACATCGATTCGAAAAAGCCGACGGAAGTGTTTATCAAGTACAAAACCGCCAAGGAGGCGGCGAAGGCACGGGCAAGCTTAGCGCAAAATGAGAATGTGTTGCGCGTTGAATCGATGGACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCTGCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAATTCTGCTGCATCGAACCACATGCCACCGCCGATGCCGATGCAGATGCCAATGCAGATGCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCCGCGTGCCGGAACAGTGGCGCCTCGTTCCAGTGCTTTGTATGTGGCATATTCTACTGCGGCGACCAATGCCAAAGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4803#0 ------------------------------------------------------------
consensus_4803#1 CCGGGAAGCTGCGGAATAGCAACGCCGGCCCAATACAGCTGAGTTTTGTGTTTTATTGTT 60
consensus_4803#0 --------------------------------AATGGCGGATAGTTTCTTCAAAGCGGTG 28
consensus_4803#1 TAACAGCTCCGTTTAACCTTGAGCAGCCAGATAATGGCGGATAGTTTCTTCAAAGCGGTG 120
****************************
consensus_4803#0 ATTCGTGATCCCAAGTGGGACGTGCGGTCGGAAGCGAAACGCTTGGGCTTTCTGTTTCAA 88
consensus_4803#1 ATTCGTGATCCCAAGTGGGACGTGCGGTCGGAAGCCAAACGCTTGGGCTTTCTGTTTCAA 180
*********************************** ************************
consensus_4803#0 TTGTATATCGATTCGAAAAAGCCGACGGAAGTGTTTATCAAGTACAAAACCGCCAAAGAG 148
consensus_4803#1 TTGTACATCGATTCGAAAAAGCCGACGGAAGTGTTTATCAAGTACAAAACCGCCAAGGAG 240
***** ************************************************** ***
consensus_4803#0 GCGGCGAAGGCACGGGCAAGCTTAGCGCAAAATGAGAATGTGTTGCGCGTTGAATCGATG 208
consensus_4803#1 GCGGCGAAGGCACGGGCAAGCTTAGCGCAAAATGAGAATGTGTTGCGCGTTGAATCGATG 300
************************************************************
consensus_4803#0 GACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCT 268
consensus_4803#1 GACGAGTGGAATATAAAACCGAAAAAGCAGGAAAGCAAGCAACCGGAACATAATGCGTCT 360
************************************************************
consensus_4803#0 GCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAACTCT 328
consensus_4803#1 GCCGCACCGTCGGTCGTGGGAAGCACTGTCCAAACTAGATCCCCGGCCAAGCATAATTCT 420
******************************************************** ***
consensus_4803#0 GCTGCATCGAACCACATGCTACCGCCGATGCCGATGCAGATGCCAATGCAGATGCCAATG 388
consensus_4803#1 GCTGCATCGAACCACATGCCACCGCCGATGCCGATGCAGATGCCAATGCAGAT------- 473
******************* *********************************
consensus_4803#0 CAGATGCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCTGCGTGCCGGAAC 448
consensus_4803#1 -----GCAGATGCCGATGGGCCCGCCGGGAATGTTTAGCGTTTGTGCCGCGTGCCGGAAC 528
****************************************** ************
consensus_4803#0 AGTGGCGCCTCGTTCCAGTGCTTTGTTTGTGGCATATTCTACTGCGGCGACCAATGCCAA 508
consensus_4803#1 AGTGGCGCCTCGTTCCAGTGCTTTGTATGTGGCATATTCTACTGCGGCGACCAATGCCAA 588
************************** *********************************
consensus_4803#0 AGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGCAACGAAT 568
consensus_4803#1 AGAGCCGATTGGCCGGCCCATATCATGCAATGTGTACCACGCTTGGTGCGAGC------- 641
*****************************************************
consensus_4803#0 CCGTTTGTGGCGGCCAATGTACCACAAAGGAGCATGCCCTTAGCCTTCAACGGAATGTTC 628
consensus_4803#1 ------------------------------------------------------------
consensus_4803#0 CCCGGGGCGGGCAACAACAATTGGTACGAGAATAAAGAAAATGCACAACATTACGCGCCG 688
consensus_4803#1 ------------------------------------------------------------
consensus_4803#0 CCGCACCCGAATGGCCCAGTGGCGGGTAGCTCCAAACAACAGGCTGGTACATCGAAACAA 748
consensus_4803#1 ------------------------------------------------------------
consensus_4803#0 CCGGCCCAGCAGCCGAAACCCGTCCCGACTGCCACCCCGAAGGAATCGCCACCCTGTAAT 808
consensus_4803#1 ------------------------------------------------------------
consensus_4803#0 GTACCCACCAACGTGCTCAAAAGTATGGGCATGAAACGTCACCAGGACCAGGCCGACCAA 868
consensus_4803#1 ------------------------------------------------------------
consensus_4803#0 TCGAACAGTGTGGTGAGTGGTGTATCGAGCGCC 901
consensus_4803#1 ---------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||