cluster # 4819

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Anopheles gambiae
cluster # 4819 cluster # 4819 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4819#0 length = 666 sequences # 2

consensus_4819#1 length = 565 sequences # 1

consensusID : consensus_4819#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 666
fasta sequence

                              [CCGGTGTTGTGGTCGGTCGTCCGGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTACACGTGGAACAGCTGACCGAGTGTGTGTGTGTGTGGTTTTGTTCTTAATAAGTAGCATCGTTTTAAATAAAATCACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTAACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAGAAGGAAAAAAAAACAACAACAAATCAGTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTACGCGGTATTCCCCCCTCACGTCATCTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAGTATTTTCCGTAAACGGTTCCTAGATACTACAACTGCTACTCGTCCTTCTCGAGACAACGGTTTCGGTCACATCTAGTCCCCCGGCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGTCGCCCGAATACCCGAAAAGCGGTGCGGCC]

[+] EMBL BM639094             [CCGGTGTTGTGGTCGGTCGTCCGGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTACACGTGGAACAGCTGACCGAGTGTGTGTGTGTGTGGTTTTGTTCTTAATAAGTAGCATCGTTTTAAATAAAATCACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTAACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAG                                                                                                                                                                                                                                                                                ]
[+] EMBL BM653265             [                     ccGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTACACGTGGAACAGCTGACCGA    GTGTGTGTGTGGTTTTGTTCTTTATTAGTAGCATCGTTTTAAATAAAAACACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTTACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCAAGAAGGAAAAAAAAACAACAACAAATCAGTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTACGCGGTATTCCCCCCTCACGTCATCTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAGTATTTTCCGTAAACGGTTCCTAGATACTACAACTGCTACTCGTCCTTCTCGAGACAACGGTTTCGGTCACATCTAGTCCCCCGGCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGTCGCCCGAATACCCGAAAAGCGGTGCGGCC]




>consensus_4819#0
CCGGTGTTGTGGTCGGTCGTCCGGGTTCGGTTTCACAGTGAGTGCACACCAGTGGGTTAC
ACGTGGAACAGCTGACCGAGTGTGTGTGTGTGTGGTTTTGTTCTTAATAAGTAGCATCGT
TTTAAATAAAATCACCCCGATCAGGAAGTTCAAAAGGAAGTAGCGAGCAGTATAGCAGTA
TGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTAC
GCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGCAAGTACATTCAGCGATAACATC
GCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTAAAAGTGAAGTAACAC
CAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAGAAGGAAAAAAAAACAACAACAAATCA
GTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTACGCGGTATTCCCCCCTCACGTCAT
CTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAGTATTTTCCGTAAACGGTTCCTAG
ATACTACAACTGCTACTCGTCCTTCTCGAGACAACGGTTTCGGTCACATCTAGTCCCCCG
GCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGTCGCCCGAATACCCGAAAAGCGGT
GCGGCC

consensusID : consensus_4819#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACGGTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGTTTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCTTGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGGAAGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCTAATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTACACAGTGAAGTAACACCAA]

[+] EMBL AL934547             [AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACGGTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGTTTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCTTGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGGAAGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCTAATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGAAGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCTTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCAAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAATTATTACACAGTGAAGTAACACCAA]




>consensus_4819#1
AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACG
GTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGT
TTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCT
TGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGGA
AGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCTA
ATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGAA
GTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTCT
TCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGCA
AGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGAA
TTATTACACAGTGAAGTAACACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4819#0      ------------------------------------------------------------
consensus_4819#1      AGAATNGCCCCGAGGACAGATTGGGGTCTCGCGCGCCCATCACTCCGTTATCAGTTGACG 60
                                                                                  

consensus_4819#0      ------------------------------------------------------------
consensus_4819#1      GTTTGATACCGTGAGTGAAGGATCCACAGTGGAACATCTCTCCTGACACGCGAAAATTGT 120
                                                                                  

consensus_4819#0      ------------------------------------------------------------
consensus_4819#1      TTAATTTTGTCTAGAAAGCGAGAAAGGGAGAGAACAACAAGGATCCTGTTTAGTGAGGCT 180
                                                                                  

consensus_4819#0      -----------CCGGTGTTGTGGTCG----GTCGTCCGGGTTCG--GTTTCACAGTGAGT 43
consensus_4819#1      TGATTTGTTGATCTTTGTCGTGATTGAGGTGTCGTTCTGTCCAGAAGATTTCCTCCGGG- 239
                                  *  *** *** * *    ***** * *    *  * **  *   * * 

consensus_4819#0      GCACACCAGTGGGTTACACGTG-GAACAGCTGACCGAGTGTG---TGTGTGTGTGGTTTT 99
consensus_4819#1      AAGCAGAATTGCATTGCGTGCGTGCACACATGTTCTGTGGTGAGGTGACCATCGAAAGCT 299
                         **  * **  ** *  * * * ***  **  *    ***   **    *       *

consensus_4819#0      GTTCTTAATAAGTAGCATCGTTTTAAATAAAATCACCCCGATCAGGAAGTTCAAA-AGGA 158
consensus_4819#1      AATGCGCAAAGGTGACCATGCTGTTGCTTGTGCACGGTTGATTTGTTTGTTCCGGTAGGA 359
                        *    * * **  *   * * *   *           ***  *   ****    ****

consensus_4819#0      AGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTC 218
consensus_4819#1      AGTAGCGAGCAGTATAGCAGTATGATCCATCCGATGTGGACGCAGCGCCCGTTCCATTTC 419
                      ************************************************************

consensus_4819#0      TTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGACGC 278
consensus_4819#1      TTCCACTGCGAGTGCATTCTACGCCGGACGTCATCGGCGTTCAAGTCGTCCAGGCGGCGC 479
                      ******************************************************** ***

consensus_4819#0      AAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGA 338
consensus_4819#1      AAGTACATTCAGCGATAACATCGCAAAACGGGTTGGGCCCGTGTTGATACCGTGCTGTGA 539
                      ************************************************************

consensus_4819#0      ATTATTAAA-AGTGAAGTAACACCAAAAAAGCGAAAGATAGAGAGAGATAGAGCGAGAAG 397
consensus_4819#1      ATTATTACACAGTGAAGTAACACCAA---------------------------------- 565
                      ******* * ****************                                  

consensus_4819#0      GAAAAAAAAACAACAACAAATCAGTGCTCTTAAACTTAGGCCTTATTGAGGCCTTATTAC 457
consensus_4819#1      ------------------------------------------------------------
                                                                                  

consensus_4819#0      GCGGTATTCCCCCCTCACGTCATCTGTGATATAAAAAAAAACTCCCCCGTGCCGTGGTAG 517
consensus_4819#1      ------------------------------------------------------------
                                                                                  

consensus_4819#0      TATTTTCCGTAAACGGTTCCTAGATACTACAACTGCTACTCGTCCTTCTCGAGACAACGG 577
consensus_4819#1      ------------------------------------------------------------
                                                                                  

consensus_4819#0      TTTCGGTCACATCTAGTCCCCCGGCGCACGGATCGAAACGCAATCAGTTTCGGTCGTCGT 637
consensus_4819#1      ------------------------------------------------------------
                                                                                  

consensus_4819#0      CGCCCGAATACCCGAAAAGCGGTGCGGCC 666
consensus_4819#1      -----------------------------