cluster # 484

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Anopheles gambiae
cluster # 484 cluster # 484 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_484#0 length = 370 sequences # 1

consensus_484#1 length = 247 sequences # 1

consensusID : consensus_484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CCGCCCACGCGTGCGCGGACGCGTGGGTAGAGAGAGAAAATAGAAAGATATAGAAAAGAAAAGACAGGTGTAGAGAGAAAAACAGGAAGAGATAAAGAGAAAGGAGACAGAGAAAGAAAGATAAATAGAAAGAGAGAGAAAGAGAGAGATAGAAAGAGAGAGAGAGAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAGGTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGCAGGGGATTGA]

[+] EMBL BM623017             [CCGCCCACGCGTGCGCGGACGCGTGGGTAGAGAGAGAAAATAGAAAGATATAGAAAAGAAAAGACAGGTGTAGAGAGAAAAACAGGAAGAGATAAAGAGAAAGGAGACAGAGAAAGAAAGATAAATAGAAAGAGAGAGAAAGAGAGAGATAGAAAGAGAGAGAGAGAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAGGTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGCAGGGGATTGA]




>consensus_484#0
CCGCCCACGCGTGCGCGGACGCGTGGGTAGAGAGAGAAAATAGAAAGATATAGAAAAGAA
AAGACAGGTGTAGAGAGAAAAACAGGAAGAGATAAAGAGAAAGGAGACAGAGAAAGAAAG
ATAAATAGAAAGAGAGAGAAAGAGAGAGATAGAAAGAGAGAGAGAGAAGCAGAGAGAGAG
AGAGAGAGAGAGAGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAG
GTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGC
AGGGGATTGA

consensusID : consensus_484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [CCGGGCAAGCAGAATTTGATAGCGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAGGTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGCAGGGGATTGAATGCGACAAATATCAAATAAAGAAAAATGTCTATTTTTTACAC]

[+] EMBL BM650521             [CCGGGCAAGCAGAATTTGATAGCGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAGGTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGCAGGGGATTGAATGCGACAAATATCAAATAAAGAAAAATGTCTATTTTTTACAC]




>consensus_484#1
CCGGGCAAGCAGAATTTGATAGCGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTA
CGCAGAAAGGAAAGGTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCG
GACAGATTTCTGGCAGGGGATTGAATGCGACAAATATCAAATAAAGAAAAATGTCTATTT
TTTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_484#0      CCGCCCACGCGTGCGCGGACGCGTGGGTAGAGAGAGAAAATAGAAAGATATAGAAAAGAA 60
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      AAGACAGGTGTAGAGAGAAAAACAGGAAGAGATAAAGAGAAAGGAGACAGAGAAAGAAAG 120
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      ATAAATAGAAAGAGAGAGAAAGAGAGAGATAGAAAGAGAGAGAGAGAAGCAGAGAGAGAG 180
consensus_484#1      --------------------------------------------CCGGGCAAGCAGAATT 16
                                                                     ***   ***   

consensus_484#0      AGAGAGAGAGAGAGAGAAAGAGATAGAGAGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAG 240
consensus_484#1      TGATAGCGAGAAAGAGATAGAGA--GTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 74
                      ** ** **** ***** *****  * * *** * *************************

consensus_484#0      AGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAG 300
consensus_484#1      AGAGAGAGAGAGAGGAGAGAGAAAAATACGATACCTTACGTAGGTACGCAGAAAGGAAAG 134
                     ************************************************************

consensus_484#0      GTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGC 360
consensus_484#1      GTACAAGAATAGGTGAGCTAGTTTTATGCGATGATTCTGTAAGGCGGACAGATTTCTGGC 194
                     ************************************************************

consensus_484#0      AGGGGATTGA------------------------------------------- 370
consensus_484#1      AGGGGATTGAATGCGACAAATATCAAATAAAGAAAAATGTCTATTTTTTACAC 247
                     **********