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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1001 fasta sequence
[GGATTCG-AGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG-CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACGATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGGCTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGGTGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA]
[+] EMBL CNS09JQ8 [GGATTCG AGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACGATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGGCTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGGTGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA]
[+] EMBL CNS099SD [ GATTCGTATTGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACG CTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGAT ]
[+] EMBL CNS09PWQ [ aAAGGTGTTGG TGCGTG AG TATTTTTTGCG CCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGG CGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAG GCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACG ]
consensusID : consensus_4861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGCTCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTATGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAAGTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTACCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGTTGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC]
[+] EMBL BM598503 [CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGCTCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTATGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAAGTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTACCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGTTGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4861#0 GGATTCGAGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAAT 60
consensus_4861#1 ------------------------------------------------------------
consensus_4861#0 TCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGG 120
consensus_4861#1 ------------------------------------------------------------
consensus_4861#0 ACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCG 180
consensus_4861#1 ------------------------------------------------------------
consensus_4861#0 TCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGG 240
consensus_4861#1 ------------------------------------------------------------
consensus_4861#0 ACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCA 300
consensus_4861#1 ------------------------------------------------------------
consensus_4861#0 CGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCTGTACGATGCGGGCGAGGGCAA 360
consensus_4861#1 --------------------------------------------------CCGTTGACTT 10
** * *
consensus_4861#0 GCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCT 420
consensus_4861#1 GCGGGGCTTACTCGATGGGGC-TGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATA 69
** *** *** * * * * *** * ** * ***
consensus_4861#0 CGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAA 480
consensus_4861#1 GGAGAAATCGGTCAATGCG-GTGAAAACCAAGCCTGCTGCTCAG--AAGCCGGCTCAGAA 126
**** * ** * * * * ** * ** ** * *** *** ***
consensus_4861#0 GAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGAT 540
consensus_4861#1 GAATGTGCTGCGCGGCAAAAAT-----CCCATCAAGAAGAAGCGTGAGCACCTTCGGTAT 181
** ** **** **** * * * ** * **** * ** **
consensus_4861#0 GGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGA 600
consensus_4861#1 GGCATCG-ATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTT---TGA 237
**** ** * * * ** * **** ******* *** * * ***
consensus_4861#0 TGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGA 660
consensus_4861#1 AAAGTATCTGA--AGGAGCGCTTTAAGGTAAACGGAAA--GGCCGGCA--ACCTCGGCAG 291
** * **** *** * * * * **** * * * *** ** *
consensus_4861#0 TGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGG 720
consensus_4861#1 CAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTC-- 349
* * * * **** * * ** ** * * * * ** *
consensus_4861#0 CGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAA 780
consensus_4861#1 ----TCCAAGCGCTACCT----GAAGTACTTGACCAGG---AAGTACTTG-AAGAAGAAC 397
* ****** ** * * * * * * * ** ** ** ** * ***
consensus_4861#0 GGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACG 840
consensus_4861#1 AGTCTCCGCGACTGGATC-CGTGT-TGTGTCCAACGATAAGGATTTGTA-CGAGCTG-CG 453
* * ** *** * * * * ** * * * **** * ***** **
consensus_4861#0 ATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGG 900
consensus_4861#1 ATACTTCCGAATCA-GCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTG 512
*** ** * * * ** *** *** * ** * **** * *** *
consensus_4861#0 CTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGG 960
consensus_4861#1 CTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC---------------------- 550
** * * * * * * * * ** *
consensus_4861#0 TGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA 1001
consensus_4861#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||