cluster # 4878

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4878 cluster # 4878 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4878#0 length = 755 sequences # 1
consensus_4878#1 length = 710 sequences # 1

consensus_4878#2 length = 228 sequences # 1
consensus_4878#3 length = 106 sequences # 1

consensusID : consensus_4878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 755
fasta sequence

                              [CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCAAATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACAAGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCTACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTGAACTACTACGATGACGTCATCGACTTATCTGGACCGACGATCACGGGGGCCGTTGCCTCGGAGGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCACTACGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAGAAGCTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATACACTAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTACAAACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTCTTTACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAACACTCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAATGCACCTTTGTCACTTTCATCATCACAAAACGTTGACAC]

[+] EMBL AL692983             [CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCAAATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACAAGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCTACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTGAACTACTACGATGACGTCATCGACTTATCTGGACCGACGATCACGGGGGCCGTTGCCTCGGAGGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCACTACGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAGAAGCTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATACACTAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTACAAACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTCTTTACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAACACTCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAATGCACCTTTGTCACTTTCATCATCACAAAACGTTGACAC]




>consensus_4878#0
CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCA
AATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACA
AGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCT
ACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTGAA
CTACTACGATGACGTCATCGACTTATCTGGACCGACGATCACGGGGGCCGTTGCCTCGGA
GGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCACTA
CGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAGAAG
CTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATACAC
TAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTACAA
ACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTCTTT
ACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAACAC
TCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAATGCA
CCTTTGTCACTTTCATCATCACAAAACGTTGACAC

consensusID : consensus_4878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATCGGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACGACTCGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCGGCCTGGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCGGCATGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCACAACGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGGCCGCTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACGCTCACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCCCAGCTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCACCCGTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGAACCTGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACATTCAACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA]

[+] EMBL BX608917             [TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATCGGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACGACTCGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCGGCCTGGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCGGCATGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCACAACGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGGCCGCTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACGCTCACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCCCAGCTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCACCCGTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGAACCTGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACATTCAACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA]




>consensus_4878#1
TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATC
GGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACG
ACTCGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCGGCCT
GGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCGGCA
TGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCACAA
CGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGGCCG
CTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACGCTC
ACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCCCAG
CTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCACCC
GTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGAACC
TGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACATTCA
ACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA

consensusID : consensus_4878#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [GCGTCCGTGGAGATCTCTGGATCCATGACCATCCTTTTCCTTATTCTGTGTATATTTTTGCTTCGTTTTCTTGTCTCCTCCGCGGTTGTAATAGTAATTAATATTATAATTTTTCATATAACTACAACGAATACATCTTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGCACAAAAATGCGTGGGTTTTAATTCACGCATTGCAGCTCTTCACAACATA]

[+] EMBL BM655612             [GCGTCCGTGGAGATCTCTGGATCCATGACCATCCTTTTCCTTATTCTGTGTATATTTTTGCTTCGTTTTCTTGTCTCCTCCGCGGTTGTAATAGTAATTAATATTATAATTTTTCATATAACTACAACGAATACATCTTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGCACAAAAATGCGTGGGTTTTAATTCACGCATTGCAGCTCTTCACAACATA]




>consensus_4878#2
GCGTCCGTGGAGATCTCTGGATCCATGACCATCCTTTTCCTTATTCTGTGTATATTTTTG
CTTCGTTTTCTTGTCTCCTCCGCGGTTGTAATAGTAATTAATATTATAATTTTTCATATA
ACTACAACGAATACATCTTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGCA
CAAAAATGCGTGGGTTTTAATTCACGCATTGCAGCTCTTCACAACATA

consensusID : consensus_4878#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 106
fasta sequence

                              [GAGAAGGGATGGCTACGACACACTCTAAACACACACATATATGCGGATGTGCTCTGCTCACAGTACATTGTGCTTATACGATCACTCTACACTATTATCAAACTAC]

[+] EMBL CNS09559             [GAGAAGGGATGGCTACGACACACTCTAAACACACACATATATGCGGATGTGCTCTGCTCACAGTACATTGTGCTTATACGATCACTCTACACTATTATCAAACTAC]




>consensus_4878#3
GAGAAGGGATGGCTACGACACACTCTAAACACACACATATATGCGGATGTGCTCTGCTCA
CAGTACATTGTGCTTATACGATCACTCTACACTATTATCAAACTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4878#0      CAGAATCCCCGNGTTATACTACAGTATTTCAAACAGGTCACTTTCCCGCTTCTTTTGTCA 60
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      ------------------------------------------------------------
                                                                                  

consensus_4878#0      AATAAACCGGCCCAACCATGGATGATGGTGCTGCCTCCACTGGTGTGATCGTGAAGAACA 120
consensus_4878#2      --------------------------------------------GCGTCCGTGGAGATCT 16
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      TGTACCGGTACGAGGTGGAAACGAGCGAACCGCGGCCAACGCCGAACGTCCCGAAGGATC 60
                                                                                  

consensus_4878#0      AGCCGGGCGCAAAGCCGCTGAACATCGTCGATGACTTCAACCGTCGCAAGATGCCGCTCT 180
consensus_4878#2      --CTGGATCCA-------TGACCATCCT---TTTCCTTATTCTGTGTATATTTTTGCTTC 64
consensus_4878#3      -----------------------------------------GAGAAGGGATGGCTACGAC 19
consensus_4878#1      GGCTGTTTGCCGAGCTGCTCAAACGGTTCGATCCGCTGATCTACAAGTACCACGAGCACG 120
                                                                              *   

consensus_4878#0      ACAAGCACTGGGTTCGCCCACAATTCTTGCAGTACAACTACATGTACGATACCGCGTG-A 239
consensus_4878#2      GTT--TTCTTGTCTCCTCCGCGGTTGTAATAGTA--ATTAATATTATAATTTTTCATATA 120
consensus_4878#3      ACA--CTCTAAACACACACATATATGCGGATGTG---CTCTGCTCACAGTACATTGTG-- 72
consensus_4878#1      ACT--CGCTGCTCGAGAACAAGGAGGAGGAAACGCTGAACGAGGAAGAGCGCAAGGCG-G 177
                             **         *                          *              

consensus_4878#0      ACTACTACGATGACGTCATCGACTTATCTGGACCGA--CGATCACGGGGGCCGTTGCCTC 297
consensus_4878#2      ACTACAACGAATACATC-TTGTTTTTTTTTTACCAATGCGCGCACGATGTTTTTCAATGC 179
consensus_4878#3      -CTTATACGATCAC-TCTACACTATTATCAAACTAC------------------------ 106
consensus_4878#1      CCTGGGAGGAGTTCGAGCAAGAGAAGAACCGACCACCGATGCCGGCGTACGGCACCAGCG 237
                       **   * **   *                 **                           

consensus_4878#0      GGAGGATCCCTCGCCCCCAGACCTGGGCCGAGCGTGTACCTGAGAACGCAGAAGACCGCA 357
consensus_4878#2      ACAAAAATGCGTGGGTTTTAATTCACGCATTGCA-GCTCTTCACAACATA---------- 228
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      GCATGTTGGGCATTGGCGGAATGGGCGGAAGAGGAGTTAATGGACCGGTTACGTCCAGCA 297
                                                                                  

consensus_4878#0      CTACGTGACATCAACCGATGCGTACAATACACCAGCATCAGGCACAAGAAGGACGACAAG 417
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      CAACGTTCGGCTTCCGGAACGATGTGCTTCCGTGGGGCTGGCCATACGCTGGACTTCCGG 357
                                                                                  

consensus_4878#0      AAGCTTATGTAACACGCTAAGTAATCAGATCAAGTCGTACAATGCGCACTCGAAGGCATA 477
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      CCGCTTACCCAGTTGCTGCGTTGCCACCGGCAGCCATCCATGCCGCCTACCCAGCGTACG 417
                                                                                  

consensus_4878#0      CACTAACAGAAAGTACCGCAAGATCCTCTAAACAACATGCGTTTCCCCATCCTGCTTCTA 537
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      CTCACCGTGGCGCTTATCTGGCCGCCCCGCACGCTGCCATCCTGGCCGCTCCTCATGCCC 477
                                                                                  

consensus_4878#0      CAAACAAAACAGAAGAGCAAAANACCAACACAAACAAAACTCTTCCAAATATTGATACTC 597
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      CAGCTGCCTCGGTCGCTCACCATGCCGGTGTTGTCCCTGGAGCCACCTCGGTCACTGCCA 537
                                                                                  

consensus_4878#0      TTTACCCCTTTCTTCTAACCGCTTGGCTTAGGTAAGGTATAATATANAACTAAATGCAAA 657
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      CCCGTGGTGCTGTGCATGTCGCGCCCCTGCCTGGACATGCCGTCTCCCAGCAGCAGCTGA 597
                                                                                  

consensus_4878#0      CACTCAATAACATCCCGTATTGCACTCAAACAATGCTTCCGCTTGCTTAGCTTACGAAAT 717
consensus_4878#2      ------------------------------------------------------------
consensus_4878#3      ------------------------------------------------------------
consensus_4878#1      ACCTGGCCCCGGCCCCGGGAACCATCTAAGTCCGAGTACACCCAGACCGCACCCAAACAT 657
                                                                                  

consensus_4878#0      GCACCTTTGTCACTTTCATCATCACAAAACGTTGACAC--------------- 755
consensus_4878#2      -----------------------------------------------------
consensus_4878#3      -----------------------------------------------------
consensus_4878#1      TCAACTGGAACTCATCATCCCACACCGTGTGCAAATCCGCTGAACAAGTGATA 710