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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 918 fasta sequence
[CTCGGGCACATTTGGCCTTTTTTTTTTTTTTTTAAGCATTATAGCCGAAAAATGAGC-GGGTTTTTTTTTATTAGTTCCTAAAGGAAGAAGTACCTGTTGCGCAAATCCTTTTGTCAATGCCAAACATATTCACCCTTGCTTGTGCCGGAAGTCTTGTGTCATGGGATGTACGCGTTTCAGATCGTTTCAGTGTTTTGCAATGTAGTACTTGTTAATATACTGATCAAT--TCTCATCCCCGAACGTCGAACGCCTAACTGTCCGAGTCGGACGACATGTTGGACGAGTTTTCGGACGAGTTGGTAACGCGCGACTGCTTCACCGTCTCGTTATGATGGTGATGCCCG-ACCGTGTGCTTCTCGCCCCGATAGATGACCGCGTTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCCGGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTGCTGGCCAGGTTCTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTCATGATCGCCTGATTCATGTA-CTCCTTCAGGTCGGTTATGTTCATCAC-CATGCCGGTCTTGCCGTCGACCGGGCCGCGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCATTGGGATTGTTGCATTTTCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAACGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATGGTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTCTGTACTTAAACTGTATCTATCAACTTGTTGAATGCCGCAGGTTTCAGTCAAAATACTGCAAAGGGAGGAAGAAGGGAAAATAGCTTTCC]
[-] EMBL CNS09I08 [CTCGGGCACATTTGGCCTTTTTTTTTTTTTTTTAAGCATTATAGCCGAAAAATGAGC GGG TTTTTTTTATTAGTTCCTAAAGGAAGAAGTACCTGTTGCGCAAATCCTTTTGTCAATGCCAAACATATTCACCCTTGCTTGTGCCGGAAGTCTTGTGTCATGGGATGTACGCGTTTCAGATCGTTTCAGTGTTTTGCAATGTAGTACTTGTTAATATACTGATCAAT TCTCATCCCCGAACGTCGAACGCCTAACTGTCCGAGTCGGACGACATGTTGGACGAGTTTTCGGACGAGTTGGTAACGCGCAACTGCTTCACCGTCTCGTTATGATGGTGATGCCCG ACCGTGTGCTTCTCGCCCCGATAGATGACCGCGTTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCCGGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTGCTGGCCAGGTTCTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTCATGATCGCCTGATTCATGTA CTCCTTCAGGTCGGTTATGTTCATCACACATGCCGGTCTTGCCGTCGACCGGGCCGCGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCATTGGGATTGTTGCATTTTCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAACGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATGGTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTCTGTACTTAAACTGT ]
[-] EMBL BX613471 [ GCCGAAAAATGAGCAGGTTTTTTTTTTATTAGTTCCTAAAGGAAGAAGTACCTGTTGCGCAAATCCTTTTGTCAATGCCAAACATATTCACCCTTGCTTGTGCCGGAAGTCTTGTGTCATGGGATGTACGCGTTTCAGATCGTTTCAGTGTTTTGCAATGTAGTACTGGTAAATATACTGTTCAATGGTCTCATCCCCGAACGTCTAACGCCTAACTGTCCGAGTCGGACGACATGTTGGACGAGTTTTTGGACGAGTTGGTAACGCGCGACTGCTTCACCGTCTCGTTATGATGGTGATGCCCG ACCGTGTGCTTCTCGCCCCGATAGATGACCGCATTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCCGGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTGCTGGCCAGGTTTTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTCATGATCGCCTGGTTCATGTA CTCCTTCAAGTCGGTTATGTTCATCAC CATGCCGGTCTTGCCGTCGACCGGGCCACGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCGTTGGGGTTGTTGCATTTGCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCA ]
[+] EMBL CNS09I09 [ ATGAGC GGGTTTTTTTTTATTAGTTCCTAAAGGAAGAAGTACCTGTTGCGCAAATCCTTTTGTCAATGCCAAACATATTCACCCTTGCTTGTGCCGGAAGTCTTGTGTCATGGGATGTACGCGTTTCAGATCGTTTCAGTGTTTTGCAATGTAGTACTTGTTAATATACTGATCAAT TCTCATCCCCGAACGTCGAACGCCTAACTGTCCGAGTCGGACGACATGTTGGACGAGTTTTCGGACGAGTTGGTAACGCGCGACTGCTTCACCGTCTCGTTATGATGGTGATGCCCGTACCGTGTGCTTTTCGCCCCGATAGATGACCGCGTTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCCGGCTTGTCCATGATCAGCTTCAGGCTTTTCCAGATGAAGATGGCCACGTTTTCGGTGGTGCTGGCCAGGTTCTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTCATGATCGCCTGATTCATGTATCTCCTTCAGGTCGGTTATGTTCATCAC CATGCCGGTTTTGCCGTCGACCGGGCCGCGCACCGTCACCTCCACGGTATAGTTTTGTCCGTGGCCATTGGGATTTTTGCATTTTCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAACGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATGGTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTTTGTACTTAAACTGTATCTATCAACTTGTTGAATGCCGCAGGTTTCAGTCAAAATACTGCAAAGGGAGGAAGAAGGGAAAATAGCTTTCC]
consensusID : consensus_4896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TGGTAACGCGCGACTGCTTCACNGTCTCGTTATGATGGTGATGCCCGACCGTGTGCTTCTCGCCCCGATAGATGACCGCATTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCCGGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTGCTGGCCAGGTTTTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTCATGATCGCCTGGTTCATGTACTCCTTCAAGTCGGTTATGTTCATCACCATGCCGGTCTTGCCGTCGACCGGGCCACGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCGTTGGGGTTGTTGCATTTGCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAACGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATGGTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTCTGTACTTAAACTGTATCTATCAACTTGTTGAATGCCGCAGTAGAATGCCGCAGGCGTTCAGTCAAAATACTGCAAAGGGAGGAAGAAGGGAAAATAGCTTTTCCGTCACGTTTCTTTTTTCTTTTTGTTGTT]
[-] EMBL BX626551 [TGGTAACGCGCGACTGCTTCACNGTCTCGTTATGATGGTGATGCCCGACCGTGTGCTTCTCGCCCCGATAGATGACCGCATTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCCGGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTGCTGGCCAGGTTTTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTCATGATCGCCTGGTTCATGTACTCCTTCAAGTCGGTTATGTTCATCACCATGCCGGTCTTGCCGTCGACCGGGCCACGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCGTTGGGGTTGTTGCATTTGCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAACGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATGGTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTCTGTACTTAAACTGTATCTATCAACTTGTTGAATGCCGCAGTAGAATGCCGCAGGCGTTCAGTCAAAATACTGCAAAGGGAGGAAGAAGGGAAAATAGCTTTTCCGTCACGTTTCTTTTTTCTTTTTGTTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4896#0 CTCGGGCACATTTGGCCTTTTTTTTTTTTTTTTAAGCATTATAGCCGAAAAATGAGCGGG 60
consensus_4896#1 ------------------------------------------------------------
consensus_4896#0 TTTTTTTTTATTAGTTCCTAAAGGAAGAAGTACCTGTTGCGCAAATCCTTTTGTCAATGC 120
consensus_4896#1 ------------------------------------------------------------
consensus_4896#0 CAAACATATTCACCCTTGCTTGTGCCGGAAGTCTTGTGTCATGGGATGTACGCGTTTCAG 180
consensus_4896#1 ------------------------------------------------------------
consensus_4896#0 ATCGTTTCAGTGTTTTGCAATGTAGTACTTGTTAATATACTGATCAATTCTCATCCCCGA 240
consensus_4896#1 ------------------------------------------------------------
consensus_4896#0 ACGTCGAACGCCTAACTGTCCGAGTCGGACGACATGTTGGACGAGTTTTCGGACGAGTTG 300
consensus_4896#1 ----------------------------------------------------------TG 2
**
consensus_4896#0 GTAACGCGCGACTGCTTCACCGTCTCGTTATGATGGTGATGCCCGACCGTGTGCTTCTCG 360
consensus_4896#1 GTAACGCGCGACTGCTTCACNGTCTCGTTATGATGGTGATGCCCGACCGTGTGCTTCTCG 62
******************** ***************************************
consensus_4896#0 CCCCGATAGATGACCGCGTTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCC 420
consensus_4896#1 CCCCGATAGATGACCGCATTCTTGTCCGTCTCGTGTATCTTTATCTCGTACAGCAGCTCC 122
***************** ******************************************
consensus_4896#0 GGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTG 480
consensus_4896#1 GGCTTGTCCATGATCAGCTTCAGGCTGTCCCAGATGAAGATGGCCACGTTTTCGGTGGTG 182
************************************************************
consensus_4896#0 CTGGCCAGGTTCTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTC 540
consensus_4896#1 CTGGCCAGGTTTTTGAAGTACGGCACGTCCTTGTCCAGGTTGAGATGGTCCAGCTTTTTC 242
*********** ************************************************
consensus_4896#0 ATGATCGCCTGATTCATGTACTCCTTCAGGTCGGTTATGTTCATCACCATGCCGGTCTTG 600
consensus_4896#1 ATGATCGCCTGGTTCATGTACTCCTTCAAGTCGGTTATGTTCATCACCATGCCGGTCTTG 302
*********** **************** *******************************
consensus_4896#0 CCGTCGACCGGGCCGCGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCATTGGGA 660
consensus_4896#1 CCGTCGACCGGGCCACGCACCGTCACCTCCACGGTATAGTTGTGTCCGTGGCCGTTGGGG 362
************** ************************************** *****
consensus_4896#0 TTGTTGCATTTTCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAA 720
consensus_4896#1 TTGTTGCATTTGCCGTACACCTGCCGGTTCGCTTCCTCACTCAGGAACGGGCTGTGCAAA 422
*********** ************************************************
consensus_4896#0 CGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATG 780
consensus_4896#1 CGATGGCACGCGCTGAAGCATTCCTTGCGGGTCAAATAAACCTGGGGCCGGGAGGACATG 482
************************************************************
consensus_4896#0 GTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTCTGTACTTAAAC 840
consensus_4896#1 GTCAGACGTTGTTGTTACAAAGTCTGGGTCAGGAACGTGAACACCACTCTGTACTTAAAC 542
************************************************************
consensus_4896#0 TGTATCTATCAACTTGTTGAATGCCGCAGGT--------------TTCAGTCAAAATACT 886
consensus_4896#1 TGTATCTATCAACTTGTTGAATGCCGCAGTAGAATGCCGCAGGCGTTCAGTCAAAATACT 602
***************************** ***************
consensus_4896#0 GCAAAGGGAGGAAGAAGGGAAAATAGCTTTCC---------------------------- 918
consensus_4896#1 GCAAAGGGAGGAAGAAGGGAAAATAGCTTTTCCGTCACGTTTCTTTTTTCTTTTTGTTGT 662
****************************** *
consensus_4896#0 -
consensus_4896#1 T 663
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||