cluster # 4902

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Anopheles gambiae
cluster # 4902 cluster # 4902 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4902#0 length = 649 sequences # 1

consensus_4902#1 length = 621 sequences # 3

consensusID : consensus_4902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAGAGAGAGAGAGAGAGATAGAGTGAGAGCGAGCGAGAAAGAAACAGAGAGGCCCAACGTGTGTGTTATCAGCGGCTTCTGCTCCATCGGCTCCAACGCGCACCCATCGGCGACGCACGGCGCTGGGTGGTTTACACATTTCCACGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGAAGCAGTGCGCGCGTGCGTTCGTGCGCTTGTGTGCGCATCCAAACCGCTGTCATTGTTATTGTAGTTGTTATTGGTAAGTATTGTGCCGCGGATGTCATTCTTTTCAAGCTTATTGATTATGCAGCACAGTGGCTATTGAACTGCTGTTGCGTATGCACGGGTGACGCCATTCAATGGGACAATTGCTTGTTACAAAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGCTTTGAGGAACTGTGCACTCAAAAAATTAACAAAAAAACACAACAACATATTGTGGTGCGTTGTGTTTGGCTCCTTTGCTTCGCTTTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCATGTGTGCGCTGCG]

[+] EMBL AL933519             [CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAGAGAGAGAGAGAGAGATAGAGTGAGAGCGAGCGAGAAAGAAACAGAGAGGCCCAACGTGTGTGTTATCAGCGGCTTCTGCTCCATCGGCTCCAACGCGCACCCATCGGCGACGCACGGCGCTGGGTGGTTTACACATTTCCACGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGAAGCAGTGCGCGCGTGCGTTCGTGCGCTTGTGTGCGCATCCAAACCGCTGTCATTGTTATTGTAGTTGTTATTGGTAAGTATTGTGCCGCGGATGTCATTCTTTTCAAGCTTATTGATTATGCAGCACAGTGGCTATTGAACTGCTGTTGCGTATGCACGGGTGACGCCATTCAATGGGACAATTGCTTGTTACAAAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGCTTTGAGGAACTGTGCACTCAAAAAATTAACAAAAAAACACAACAACATATTGTGGTGCGTTGTGTTTGGCTCCTTTGCTTCGCTTTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCATGTGTGCGCTGCG]




>consensus_4902#0
CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTAC
CTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAGAGAGAGAGAGAGAGATAGAGT
GAGAGCGAGCGAGAAAGAAACAGAGAGGCCCAACGTGTGTGTTATCAGCGGCTTCTGCTC
CATCGGCTCCAACGCGCACCCATCGGCGACGCACGGCGCTGGGTGGTTTACACATTTCCA
CGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGAAGCAGTGCGCGCGT
GCGTTCGTGCGCTTGTGTGCGCATCCAAACCGCTGTCATTGTTATTGTAGTTGTTATTGG
TAAGTATTGTGCCGCGGATGTCATTCTTTTCAAGCTTATTGATTATGCAGCACAGTGGCT
ATTGAACTGCTGTTGCGTATGCACGGGTGACGCCATTCAATGGGACAATTGCTTGTTACA
AAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGCTTTGAGGAACTGTGCACTCAAAAA
ATTAACAAAAAAACACAACAACATATTGTGGTGCGTTGTGTTTGGCTCCTTTGCTTCGCT
TTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCATGTGTGCGCTGCG

consensusID : consensus_4902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 621
fasta sequence

                              [CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTACAGCTAGTTGACAGCAGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCAAACGTTTTGGTCACAGAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTGCATGTGTTTTTGCACCGTTTGTAGTGTTTGCGATTATTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTGTAAATTGCTGCTCTTCTCGTGAGTGATCTATTTCGCGCATCGCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAAGAAATTGAAAGGGAGAGA]

[+] EMBL BM599750             [CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTACAGCTAGTTGACAGCAGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCAAACGTTTTGGTCACAGAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTGCATGTGTTTTTGCACCGTTTGTAGTGTTTGCGATTATTATCGTTGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGTCAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTCTCTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTGTAAATTGCTGCTCTTCTCGTGAGTGATCTATTTCGCGCATCGCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGTTAAGAAATTGAAAGGGAGAGA]
[-] EMBL AGA280238            [                                                                                                                                                                                           gagGTTTGCGATTATTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTG                                                                                                    ]
[+] EMBL AGA281934            [                                                                                                                                                                                                         TTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTCCTTTGTTTTAATTTTGTTTCGTTGT                                                                                                   ]




>consensus_4902#1
CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTACAGCTAGTTGACAGC
AGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCAAACGTTTTGGTCACA
GAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTGCATGTGTTTTTGCAC
CGTTTGTAGTGTTTGCGATTATTGTCGATGTTCGTCGCGTCCCCCGTGTGTCGGTGAATC
GCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGAGACAGAGCAGGCGAGCAAGA
GCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCGTTCTCTCCCTCTCTCTCTGT
GTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTGCTTAAGTGTGCCGCCGCGCC
GCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTTTTTTTTGTTCCGGCAATAGC
AGTAGTAGTAGTGGGTCTTTTGTTTTATTTTTGTTTCGTTGTAAATTGCTGCTCTTCTCG
TGAGTGATCTATTTCGCGCATCGCACTGTCGCGCTTACCTACTGGTTGGTGGCGTAAGGT
TAAGAAATTGAAAGGGAGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4902#0      CCCCCGAGGTTAGCTCTTCTCGTGAGTGATCTATTTCGCGCATCTCACTGTCGCGCTTAC 60
consensus_4902#1      ---------------CCGCAAGCGTCGGGTGTGCATGTTGTGTGAGAGTGTAGAGCGTTA 45
                                     *  *  * *   * * *   *   *  *   * *** * ** *  

consensus_4902#0      CTACTGGTTGGTGGCGTAAGGTTAGAAATTGAAAGGGAG-AGAGAGAGAGAGAGATAGAG 119
consensus_4902#1      CAGCTAGTTGACAGCAGCAAGTAGCGAGTTAACAGAAAATACGGGAAGCGAGCGGAAGCA 105
                      *  ** ****   **   * **    * ** * **  *  *  *  ** *** *  **  

consensus_4902#0      TGAGAGCGAGCGAGAAAGA-----------AACAGAGAGGCCCAACGTGTGTGTTATCAG 168
consensus_4902#1      AACGTTTTGGTCACAGAATTTTTTTTTTTTAATTCAAAAGCCTTGCTCCCCACCTCTGTG 165
                         *     *  * * *             **   * * ***   *        * *  *

consensus_4902#0      CGGCTTCTGCTCCATCGGCTCCAACGC--GCACCCATCGGCGACGCACGGCGCTGGGTGG 226
consensus_4902#1      CATGTGTTTTTGCACCGTTTGTAGTGTTTGCGATTATTGTCGATGTTCGTCGC-----GT 220
                      *   *  *  * ** **  *  *  *   **    ** * *** *  ** ***     * 

consensus_4902#0      TTTACACATTTCCACGAATCCACGACGCACGGACGGTTGCAGCGCCCGAACGCACACCGA 286
consensus_4902#1      CCCCCGTGTGTCGGTGAATCGCGCGCGCGTGTTCTGTGAAAACGGCTGAGAGAGCGCGGA 280
                          *   * **   *****     ***  *  * **   * ** * **  *  * * **

consensus_4902#0      AGCAGTGCGCGCGTGCGTTCGTGCGCTTGTGTGC---GCATCCA--AACCGCTGTCATTG 341
consensus_4902#1      GACAGAGCAGGCGAGCAAGAGCGCTCCTTCACATCCGACGTCCATCAAACGGCTCCGGCG 340
                        *** **  *** **    * ** * *          * ****  ** **    *   *

consensus_4902#0      TTATTGTAGTTGTTATTGGTAAGTAT---TGTGCCGCGGATGTCATTCTTTTCAAGCTTA 398
consensus_4902#1      TTCTCTCCCTCTCTCTCTGTGTGTGTGTATGTGTGTTGAAGGAAGTGTTTCAAATGTTTG 400
                      ** *     *   * *  **  ** *   ****    * * *   *  **   * * ** 

consensus_4902#0      -TTGATTATGCAGCACAGTGGCTATTGAACTGCTGTTGCGTATGCACGGGTG-ACGCCAT 456
consensus_4902#1      CTTAAGTGTGCCGCCGCGCCGCAAGTGTGTATTCAGTTCAGCTGCTCGAGTGTACAGTTT 460
                       ** * * *** **   *  ** * **         * *   *** ** *** **    *

consensus_4902#0      TCAATGGGACAATTGCTTGTTACAAAAGGAGTGTATAATTTTGCCCCTGTTATAGGATGC 516
consensus_4902#1      TTTTTTGTTCCGGCAATAGCAGTAGTAGTAGTGGGTC-TTTTGTTTTATTTTTGTTTCGT 519
                      *   * *  *      * *    *  ** ****  *  *****      ** *     * 

consensus_4902#0      TTTGAGGAACTGTGCACTCAAAAAATTAACAAAAAAACACAACAACATATTGTGGTGCGT 576
consensus_4902#1      TGTAAATTGCTGCTCTTCTCGTGAGTGATCTATTTCGCGCAT---CGCACTGTCGCGC-T 575
                      * * *    ***  *        * * * * *     * **    *  * *** * ** *

consensus_4902#0      TGTGTTTGGCTCCTTTGCTTCGCTTTTCTCAAGCGGCTGTGTCGGGTGCGCATCATCCCA 636
consensus_4902#1      TACCTACTGGTTGGTGGCGTAAGGTTAAGAAATTGAAAGGGAGAGA-------------- 621
                      *   *   * *   * ** *    **    **  *   * *   *               

consensus_4902#0      TGTGTGCGCTGCG 649
consensus_4902#1      -------------