cluster # 4930

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Anopheles gambiae
cluster # 4930 cluster # 4930 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4930#0 length = 809 sequences # 2

consensus_4930#1 length = 388 sequences # 2

consensusID : consensus_4930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 809
fasta sequence

                              [CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTACCGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAACTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACG---ATGTTTATTTTTATATACCTTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGCATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATGGGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCCAAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATTCTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATGCGGCGGAATTTTGCTGAATGGAAAAGAAA]

[+] EMBL BM592174             [CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTACCGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAACTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACG   ATGTTTATTTTTATATACCTTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGCATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATGGGTGTTCCCACTAGCGAAAAAGAAAAACTGA                                                                                                                                                                                  ]
[-] EMBL AGA281063            [                                                                                                                                                                                                                                                                                                                                                                                                                           AAAGGGGACGCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACGATTATTTTTATTTTTATATACCTTAATTTAACGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCAAGCATCCTCCCCGTCGAGATTCGCATCATCATGCGCAATAGACAGTTCCACGTG GAATGATGGGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCCAAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATTCTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATGCGGCGGAATTTTGCTGAATGGAAAAGAAA]




>consensus_4930#0
CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTAC
CGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAG
AGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACC
TGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCAT
CCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTAC
TCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAA
CTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGAC
GCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACGATGTTTATTTTTATATACC
TTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGC
ATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATG
GGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCC
AAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATT
CTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATG
CGGCGGAATTTTGCTGAATGGAAAAGAAA

consensusID : consensus_4930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 388
fasta sequence

                              [ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTACACAGAGAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAACATATAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACG]

[+] EMBL AGA282691            [ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTACACAGAGAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAACATATAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACG]
[+] EMBL AGA282692            [ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTGCACAGAGAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAACATANAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTT                                   ]




>consensus_4930#1
ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTACACAGA
GAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCC
ACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAAT
CATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTT
TACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACA
AAACATATAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTTATAGATG
TGTTATTACCCTAGACCGCAGCTAGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4930#0      CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTAC 60
consensus_4930#1      -----------------------------------------------------ATTTTAC 7
                                                                           *******

consensus_4930#0      CGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAG 120
consensus_4930#1      CGCGTGGTC-GTGTGTGGACA---GTGGACATACACACACACACGGACGTACACAGAGAG 63
                      ** **** * ***     ***   **  * * * * * * * *  **   * * ******

consensus_4930#0      AGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACC 180
consensus_4930#1      AGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACC 123
                      *************** ** ******* ************ ********************

consensus_4930#0      TGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCAT 240
consensus_4930#1      TGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCAT 183
                      **************************** ****************** ************

consensus_4930#0      CCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTAC 300
consensus_4930#1      CCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTAC 243
                      *****************************  *** *************************

consensus_4930#0      TCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAA 360
consensus_4930#1      TCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAA 303
                      ************* **********************  **********************

consensus_4930#0      CTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGAC 420
consensus_4930#1      CATATAGAGCGAGA----------------GAGAGAGAGATAGAGAGAGCGAAAGGGGAC 347
                      *  * *********                ********** *******************

consensus_4930#0      GCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACGATGTTTATTTTTATATACC 480
consensus_4930#1      GCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACG------------------- 388
                      ******************   ********************                   

consensus_4930#0      TTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGC 540
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      ATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATG 600
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      GGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCC 660
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      AAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATT 720
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATG 780
consensus_4930#1      ------------------------------------------------------------
                                                                                  

consensus_4930#0      CGGCGGAATTTTGCTGAATGGAAAAGAAA 809
consensus_4930#1      -----------------------------