cluster # 4932

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4932 cluster # 4932 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4932#0 length = 843 sequences # 3

consensus_4932#1 length = 271 sequences # 1

consensusID : consensus_4932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 843
fasta sequence

                              [CCGCCCACGCGTCCGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCGCTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGCTCGACGCGATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCGACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATGTACATCGAGCAGGGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCCATACGAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAAAACGCTGTTCCAGAAGTTGCCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTTTGCGCTCGGCGTCCGGCTGGTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGAATG]

[+] EMBL BM592105             [CCGCCCACGCGTCCGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCGCTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGCTCGACGCGATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCGACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATGTACATCGAGCAGGGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAG                                                                                                                                                                                                                     ]
[+] EMBL BX606762             [                                                                                                                                                                                                                                                       GATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCACTCGACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCT GCTGGTGATGTACATCGAGCA GGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCCATACGAAG                                                                                                                                                                ]
[-] EMBL AGA282700            [                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGGTGGAGGTCCCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCAATACGAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAAAACGCTGTTCCAGAAGTTGCCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTTTGCGCTCGGCGTCCGGCTGGTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGAATG]




>consensus_4932#0
CCGCCCACGCGTCCGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAA
CGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGC
CCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACT
GCTTTAGCGCGCTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGC
TCGACGCGATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCG
ACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGC
TGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATG
TACATCGAGCAGGGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTT
GCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGT
GTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACAT
AGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTT
TGTCGATCAACTGCCATACGAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAA
AACGCTGTTCCAGAAGTTGCCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTT
TGCGCTCGGCGTCCGGCTGGTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGA
ATG

consensusID : consensus_4932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAG]

[+] EMBL AGA281072            [GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAG]




>consensus_4932#1
GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCT
AGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGA
GCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCT
CGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGC
CACAGAGTGGCCACTGAAAAGTTTCCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4932#0      -----------------------------------------CCGCCCACGCGTCCGGTCT 19
consensus_4932#1      GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCT 60
                                                               **  **  * **  *****

consensus_4932#0      AGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGA 79
consensus_4932#1      AGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGA 120
                      ************************************************************

consensus_4932#0      GCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCT 139
consensus_4932#1      GCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCT 180
                      ************************************************************

consensus_4932#0      CGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCGCTGTTGGC 199
consensus_4932#1      CGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGC 240
                      *************************************************** ********

consensus_4932#0      CACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGCTCGACGCGATCGTGGCGGC 259
consensus_4932#1      CACAGAGTGGCCACTGAAAAGTTTCCAGCAG----------------------------- 271
                      *******************************                             

consensus_4932#0      GATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCGACGTGAACAATCCCAACAT 319
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      CGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTC 379
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      GTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATGTACATCGAGCAGGGATTTG 439
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      GCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGG 499
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      CGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGG 559
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAAC 619
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCCATAC 679
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      GAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAAAACGCTGTTCCAGAAGTTG 739
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      CCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTTTGCGCTCGGCGTCCGGCTG 799
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      GTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGAATG 843
consensus_4932#1      --------------------------------------------