cluster # 4938

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Anopheles gambiae
cluster # 4938 cluster # 4938 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4938#0 length = 834 sequences # 2

consensus_4938#1 length = 648 sequences # 1
consensus_4938#2 length = 267 sequences # 1

consensusID : consensus_4938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 834
fasta sequence

                              [CCGCCCACGCGTCCGAGCGTAACTTATCCCCACAACCTTACTTTCCCGTGCTCCCAATTCCCTATCCTGTCCCACACCACCTTCCTTTTGTTTCTGCATTGAAACAAACATTTTTAACTGTGTTCTGCAACGCAACTGATGGATTTTGTAGTCTGTAAGGAAACAAGTTTTTTTTTATTATTATTATTA-CTTTAATATTTTACACACAACATGCAAGCAAATAAGCAAGCAAACAAGCAAGCAAACAAAACATATCTATAACAAAACGTTTATCTTTATTGTGTAATGCCGCAAGCGAGCAAAACTAACAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATGTGCTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACACACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGGGAAAGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAGGAGATATAGGAAGAAGAAAGATGACGAAATAATAAGAAAGAAGCAGAAGAAGAAGCAGTAGAAGAAGACGAAATAAGAAVAAAAATGAGAAGGAGCAGAAGAAGATGAAATANTAAGATGAAATAAGAAGAAGAAACAAAGAATAGAAGAATAGGAAGCAAGAAGAAGAAAAAAAAA]

[+] EMBL BM597658             [CCGCCCACGCGTCCGAGCGTAACTTATCCCCACAACCTTACTTTCCCGTGCTCCCAATTCCCTATCCTGTCCCACACCACCTTCCTTTTGTTTCTGCATTGAAACAAACATTTTTAACTGTGTTCTGCAACGCAACTGATGGATTTTGTAGTCTGTAAGGAAACAAGTTTTTTTTTATTATTATTATTA CTTTAATATTTTACACACAACATGCAAGCAAATAAGCAAGCAAACAAGCAAGCAAACAAAACATATCTATAACAAAACGTTTATCTTTATTGTGTAATGCCGCAAGCGAGCAAAACTAACAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATGTGCTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACACACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGGGAAAGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAGGAGATATAGG                                                                                                                                                                       ]
[-] EMBL AGA281254            [                                                                                                                                                                    AAGTTTTTTTATAATATTATTATTACCTTAAATATTTTACACACAACATGCAAGCAAATAAGC     AACAAGCAAGCAAACAAAACATATCTATAACAAAACGTTTATCTTTATTGTGTAATGCCGCAAGCGAGCAAAACTAACAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATGTGCTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACACACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGTTAGAACAATAATGCTAGAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAAGAAAGAAGAAGAAAGCTAAAGAAT GAAAGAGAAGGAGAAAGAAGTAAAAAGGAAAAGAAAAATGAATTAGAAGAAGTAAGAACAACATAGAAAAGGAAGATACAGGAAGAAGAAAGATGACGAAATAATAAGAAAGAAGCAGAAGAAGAAGCAGTAGAAGAAGACGAAATAAGAAVAAAAATGAGAAGGAGCAGAAGAAGATGAAATANTAAGATGAAATAAGAAGAAGAAACAAAGAATAGAAGAATAGGAAGCAAGAAGAAGAAAAAAAAA]




>consensus_4938#0
CCGCCCACGCGTCCGAGCGTAACTTATCCCCACAACCTTACTTTCCCGTGCTCCCAATTC
CCTATCCTGTCCCACACCACCTTCCTTTTGTTTCTGCATTGAAACAAACATTTTTAACTG
TGTTCTGCAACGCAACTGATGGATTTTGTAGTCTGTAAGGAAACAAGTTTTTTTTTATTA
TTATTATTACTTTAATATTTTACACACAACATGCAAGCAAATAAGCAAGCAAACAAGCAA
GCAAACAAAACATATCTATAACAAAACGTTTATCTTTATTGTGTAATGCCGCAAGCGAGC
AAAACTAACAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATGTG
CTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACACAC
AATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTG
ATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAG
AAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGGGAA
AGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAGGAG
ATATAGGAAGAAGAAAGATGACGAAATAATAAGAAAGAAGCAGAAGAAGAAGCAGTAGAA
GAAGACGAAATAAGAAVAAAAATGAGAAGGAGCAGAAGAAGATGAAATANTAAGATGAAA
TAAGAAGAAGAAACAAAGAATAGAAGAATAGGAAGCAAGAAGAAGAAAAAAAAA

consensusID : consensus_4938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CCGTAATAGAGCATGAGAGGTCGGACAAAGACATTTTGTTCGGAAGAAAAAGTGTTTTTTTCGCTCTCCCTCTTTTTTCTCGTAACACACGGGTTGAGCAAAGTGAAGAGAGTTATCGGAAGGTAGCAGTAAAAGCTACAACAACAGCTCCCCACAACAACAACACACACAATAAAATGGTGCCAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGGAAAGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAGGAGATATAGGAAGAAGAAAGATGACGAAATAAGAAGAAGGAAGCAGAAGAAGAAGCAGTACAAGAAGACGGAATAAGAAGAAGAATGAGAAGGAAGTAGAAGAAGATGAAATAAGAAGAAGAAACAAAGAATAGGAGAATGGGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAA]

[+] EMBL BM606224             [CCGTAATAGAGCATGAGAGGTCGGACAAAGACATTTTGTTCGGAAGAAAAAGTGTTTTTTTCGCTCTCCCTCTTTTTTCTCGTAACACACGGGTTGAGCAAAGTGAAGAGAGTTATCGGAAGGTAGCAGTAAAAGCTACAACAACAGCTCCCCACAACAACAACACACACAATAAAATGGTGCCAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGGAAAGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAGGAGATATAGGAAGAAGAAAGATGACGAAATAAGAAGAAGGAAGCAGAAGAAGAAGCAGTACAAGAAGACGGAATAAGAAGAAGAATGAGAAGGAAGTAGAAGAAGATGAAATAAGAAGAAGAAACAAAGAATAGGAGAATGGGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAA]




>consensus_4938#1
CCGTAATAGAGCATGAGAGGTCGGACAAAGACATTTTGTTCGGAAGAAAAAGTGTTTTTT
TCGCTCTCCCTCTTTTTTCTCGTAACACACGGGTTGAGCAAAGTGAAGAGAGTTATCGGA
AGGTAGCAGTAAAAGCTACAACAACAGCTCCCCACAACAACAACACACACAATAAAATGG
TGCCAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGG
CAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAA
AGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGGAAAGAAGTAAAAA
GGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAGGAGATATAGGAAGA
AGAAAGATGACGAAATAAGAAGAAGGAAGCAGAAGAAGAAGCAGTACAAGAAGACGGAAT
AAGAAGAAGAATGAGAAGGAAGTAGAAGAAGATGAAATAAGAAGAAGAAACAAAGAATAG
GAGAATGGGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGA
AGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAA

consensusID : consensus_4938#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [CGACCCACGCGTCCGCAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATGTGCTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACACACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAA]

[+] EMBL BM622775             [CGACCCACGCGTCCGCAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATGTGCTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACACACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAATAAGAAGCAGAAAAAGATGATCAA]




>consensus_4938#2
CGACCCACGCGTCCGCAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTG
CAATGTGCTGCGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAA
CACACACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGG
ATTTGTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAG
AAATAAGAAGCAGAAAAAGATGATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4938#0      CCGCCCACGCGTCCGAGCGTAACTTATCCCCACAACCTTACTTTCCCGTGCTCCCAATTC 60
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      ------------------------------------------------------------
                                                                                  

consensus_4938#0      CCTATCCTGTCCCACACCACCTTCCTTTTGTTTCTGCATTGAAACAAACATTTTTAACTG 120
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      ------------------------------------------------------------
                                                                                  

consensus_4938#0      TGTTCTGCAACGCAACTGATGGATTTTGTAGTCTGTAAGGAAACAAGTTTTTTTTTATTA 180
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      ------------------------------------------------------------
                                                                                  

consensus_4938#0      TTATTATTACTTTAATATTTTACACACAACATGCAAGCAAATAAGCAAGCAAACAAGCAA 240
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      ------------------------------------------------------------
                                                                                  

consensus_4938#0      GCAAACAAAACATATCTATAACAAAACGTTTATCTTTATTGTGTAATGCCGCAAGCGAGC 300
consensus_4938#2      -------------------------------------------------------CGACC 5
consensus_4938#1      --------CCGTAATAGAGCATGAGAGGTCGGACAAAGACATTTTGTTCGGAAGAAAAAG 52
                                                                               *  

consensus_4938#0      AAAAC--TAACAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATG 358
consensus_4938#2      CACGCGTCCGCAAAAACTACATGTTTAGCTGTAACGATACGATCGAACACTAGTGCAATG 65
consensus_4938#1      TGTTT-TTTTCGCTCTCCCTCTTTTTTCTCGTAACACACGGGTTGAGCAA-AGTGAAGAG 110
                                *     *    * ***    *****     * * ** **  **** *  *

consensus_4938#0      TGCTG-CGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACA 417
consensus_4938#2      TGCTG-CGAATGTTTTAAACTTCATATGGCGGGCGGGCAGCTCCCCACAACAACAACACA 124
consensus_4938#1      AGTTATCGGAAGGT---AGCAGTAAAAGCTACAACAACAGCTCCCCACAACAACAACACA 167
                       * *  ** * * *   * *   * * *         ***********************

consensus_4938#0      CACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTT 477
consensus_4938#2      CACAATAAAATGGTGCAAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTT 184
consensus_4938#1      CACAATAAAATGGTGCCAGTGTAGGTTTAGTAGGCTAGAATAATAATGCTACAAGGATTT 227
                      **************** *******************************************

consensus_4938#0      GTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAAT 537
consensus_4938#2      GTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAAT 244
consensus_4938#1      GTGATTTTGATGGCAAGAGAGATGGAAGAAGCGAGAAAGAGGAAATGGAGAAGAAGAAAT 287
                      ************************************************************

consensus_4938#0      AAGAAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGG 597
consensus_4938#2      AAGAAGCAGAAAAAGATGATCAA------------------------------------- 267
consensus_4938#1      AAGAAGCAGAAAAAGATGATCAAGAAAGAAAAAGAAAGCTGAGCAATAGAAGTAAAGGGG 347
                      ***********************                                     

consensus_4938#0      GAAAGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAG 657
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      -AAAGAAGTAAAAAGGAAAAGAAAAAGGAAATAGAAGAAGTACGAAGAACACAGAAAAAG 406
                                                                                  

consensus_4938#0      GAGATATAGGAAGAAGAAAGATGACGAAATAATAAGAAAGAAGCAGAAGAAGAAGCAGTA 717
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      GAGATATAGGAAGAAGAAAGATGACGAAATAAGAAGAAGGAAGCAGAAGAAGAAGCAGTA 466
                                                                                  

consensus_4938#0      GAAGAAGACGAAATAAGAAVAAAAATGAGAAGGA-GCAGAAGAAGATGAAATANTAAGAT 776
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      CAAGAAGACGGAATAAGAAGAAGAATGAGAAGGAAGTAGAAGAAGATGAAATAAGAAGAA 526
                                                                                  

consensus_4938#0      GAAATAAGAAGAAGAAACAAAGAATAGAAGAATAGGAAGCAAGAAGAAGAAAAAAAAA-- 834
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      GAAACAAAGAATAGGAGAATGGGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAG 586
                                                                                  

consensus_4938#0      ------------------------------------------------------------
consensus_4938#2      ------------------------------------------------------------
consensus_4938#1      AAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAG 646
                                                                                  

consensus_4938#0      --
consensus_4938#2      --
consensus_4938#1      AA 648