cluster # 4949

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Anopheles gambiae
cluster # 4949 cluster # 4949 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4949#0 length = 919 sequences # 3

consensus_4949#1 length = 508 sequences # 1

consensusID : consensus_4949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 919
fasta sequence

                              [TGTCCGCCGCAGGCCAACTACGAGCCACTGGTGAAGGCGGCGGAGCATCAGGGCTTCGAGATACTGACCACGAGCGGCAAGGAGCTGGCCACTAGCCTGGACAAGGCGGTCAAGCCGGACAATCCGTACTTCAACACGATGCTGCGCATACTGGCCACGCGCTGCATGATGCAGGCCGTCTACTTCATCAGCGGCACCGTGCAGCGGGACGAGTTCTTCCACTACGGTTTGGCCGCCCCGATTTACACCCACTTTACGTCTCCGATTCGCCGGTACGCCGACATAATCGTGCACCGGCTGCTGGCGGCCTGCATCGGGGCCGATTCCACCTACCCGGAGCTGCTGGACAAGAAGGTCAACTCGAACCTGTGCAACAATCTGAACTACCGCAACCGGATGGCACAGTACGCGGGCCGCGCCTCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTACATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGTACGATTTACGTGACGGGGCGCAACAACGANGAGATCAAAACGGGCGTCCGGNTTGTGTACGACGAGGAGCAGCAGAACGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGTGATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCTGGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGAAACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGCAAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCCTACTAAAAAAAAAAAAAAA]

[+] EMBL BX623204             [TGTCCGCCGCAGGCCAACTACGAGCCACTGGTGAAGGCGGCGGAGCATCAGGGCTTCGAGATACTGACCACGAGCGGCAAGGAGCTGGCCACTAGCCTGGACAAGGCGGTCAAGCCGGACAATCCGTACTTCAACACGATGCTGCGCATACTGGCCACGCGCTGCATGATGCAGGCCGTCTACTTCATCAGCGGCACCGTGCAGCGGGACGAGTTCTTCCACTACGGTTTGGCCGCCCCGATTTACACCCACTTTACGTCTCCGATTCGCCGGTACGCCGACATAATCGTGCACCGGCTGCTGGCGGCCTGCATCGGGGCCGATTCCACCTACCCGGAGCTGCTGGACAAGAAGGTCAACTCGAACCTGTGCAACAATCTGAACTACCGCAACCGGATGGCACAGTACGCGGGCCGCGCCTCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTACATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGTACGATTTACGTGACGGGGCGCAACAACGANGAGATCAAAACGGGCGTCCGGNTTGTGTACGACGAGGAGCAGCAGA                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AGA283187            [                                                                                                                                                        GGCCACGCGCTGCATGATGCAGGCCGTCTACTTCATCAGCGGCACCGTGCAGCGGGACGAGTTCTTCCACTACGGTTTGGCCGCCCCGATTTACACCCACTTTACGTCTCCGATTCGCCGGTACGCCGACATAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AGA281596            [                                                                                                                                                                                                                                                                                                                          CGGGGCCGATTCCACCTACCCGGAGCTGCTGGACAAGAAGGTCAACTCGAACCTGTGCAACAATCTGAACTACCGCAACCGGATGGCACAGTACGCGGG CGCGCCTCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTACATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGTACGATTTACGTGACGGGGCGCAACAACGAGGAGATCAAAACGGGCGTCCGGTTTGTGTACGACGAGGAGCAGCAGAACGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGTGATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCTGGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGAAACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGCAAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCCTACTAAAAAAAAAAAAAAA]




>consensus_4949#0
TGTCCGCCGCAGGCCAACTACGAGCCACTGGTGAAGGCGGCGGAGCATCAGGGCTTCGAG
ATACTGACCACGAGCGGCAAGGAGCTGGCCACTAGCCTGGACAAGGCGGTCAAGCCGGAC
AATCCGTACTTCAACACGATGCTGCGCATACTGGCCACGCGCTGCATGATGCAGGCCGTC
TACTTCATCAGCGGCACCGTGCAGCGGGACGAGTTCTTCCACTACGGTTTGGCCGCCCCG
ATTTACACCCACTTTACGTCTCCGATTCGCCGGTACGCCGACATAATCGTGCACCGGCTG
CTGGCGGCCTGCATCGGGGCCGATTCCACCTACCCGGAGCTGCTGGACAAGAAGGTCAAC
TCGAACCTGTGCAACAATCTGAACTACCGCAACCGGATGGCACAGTACGCGGGCCGCGCC
TCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTAC
ATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGT
ACGATTTACGTGACGGGGCGCAACAACGANGAGATCAAAACGGGCGTCCGGNTTGTGTAC
GACGAGGAGCAGCAGAACGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGT
GATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCT
GGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGA
AACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGC
AAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCC
TACTAAAAAAAAAAAAAAA

consensusID : consensus_4949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CCGCGGACGCGTGGGCGGGCCGCGCCTCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTACATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGTACGATTTACGTGACGGGGCGCAACAACGAGGAGATCAAAACGGGCGTCCGGTTTGTGTACGACGAGGAGCAGCAGACGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGTGATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCTGGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGAAACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGCAAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCCTAG]

[+] EMBL BM583038             [CCGCGGACGCGTGGGCGGGCCGCGCCTCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTACATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGTACGATTTACGTGACGGGGCGCAACAACGAGGAGATCAAAACGGGCGTCCGGTTTGTGTACGACGAGGAGCAGCAGACGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGTGATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCTGGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGAAACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGCAAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCCTAG]




>consensus_4949#1
CCGCGGACGCGTGGGCGGGCCGCGCCTCGGTCGCGCTGCACACGCATCTGTTCTTCCGCA
AGCGCTCGGAGGACGAGCAGGCGTACATACTGTTCATCCGCAAGAACGCGCTTCAGATAC
TGGTGCCGAAGTATGGGTTCGAGGGTACGATTTACGTGACGGGGCGCAACAACGAGGAGA
TCAAAACGGGCGTCCGGTTTGTGTACGACGAGGAGCAGCAGACGCAGCGCTGCGGCCAGG
TTGTGTTCCGCGCGTTCGATCCGGTGATCGTGCGGCTCAGCCTCGACTCGACGAACGTGC
AGCACGAAAAGCTCGTGTTCGAGCTGGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGG
CGCAAGGTGCGGACGCGGAAGTGGAAACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTA
CGAAGTCGAAGAAAAACAAGAAGGCAAAGTAAGGAAATTGTAATCAAACATGTTTTTTAG
AATAAACGCGTTAACGCTCCTCCCCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4949#0      TGTCCGCCGCAGGCCAACTACGAGCCACTGGTGAAGGCGGCGGAGCATCAGGGCTTCGAG 60
consensus_4949#1      ------------------------------------------------------------
                                                                                  

consensus_4949#0      ATACTGACCACGAGCGGCAAGGAGCTGGCCACTAGCCTGGACAAGGCGGTCAAGCCGGAC 120
consensus_4949#1      ------------------------------------------------------------
                                                                                  

consensus_4949#0      AATCCGTACTTCAACACGATGCTGCGCATACTGGCCACGCGCTGCATGATGCAGGCCGTC 180
consensus_4949#1      ------------------------------------------------------------
                                                                                  

consensus_4949#0      TACTTCATCAGCGGCACCGTGCAGCGGGACGAGTTCTTCCACTACGGTTTGGCCGCCCCG 240
consensus_4949#1      ------------------------------------------------------------
                                                                                  

consensus_4949#0      ATTTACACCCACTTTACGTCTCCGATTCGCCGGTACGCCGACATAATCGTGCACCGGCTG 300
consensus_4949#1      ------------------------------------------------------------
                                                                                  

consensus_4949#0      CTGGCGGCCTGCATCGGGGCCGATTCCACCTACCCGGAGCTGCTGGACAAGAAGGTCAAC 360
consensus_4949#1      ------------------------------------------------------------
                                                                                  

consensus_4949#0      TCGAACCTGTGCAACAATCTGAACTACCGCAACCGGATGGCACAGTACGCGGGCCGCGCC 420
consensus_4949#1      ---------------------------------CCGCGGACGC-GTGGGCGGGCCGCGCC 26
                                                       * *  * * * **  ************

consensus_4949#0      TCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTAC 480
consensus_4949#1      TCGGTCGCGCTGCACACGCATCTGTTCTTCCGCAAGCGCTCGGAGGACGAGCAGGCGTAC 86
                      ************************************************************

consensus_4949#0      ATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGT 540
consensus_4949#1      ATACTGTTCATCCGCAAGAACGCGCTTCAGATACTGGTGCCGAAGTATGGGTTCGAGGGT 146
                      ************************************************************

consensus_4949#0      ACGATTTACGTGACGGGGCGCAACAACGANGAGATCAAAACGGGCGTCCGGNTTGTGTAC 600
consensus_4949#1      ACGATTTACGTGACGGGGCGCAACAACGAGGAGATCAAAACGGGCGTCCGGTTTGTGTAC 206
                      ***************************** ********************* ********

consensus_4949#0      GACGAGGAGCAGCAGAACGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGT 660
consensus_4949#1      GACGAGGAGCAGCAGA-CGCAGCGCTGCGGCCAGGTTGTGTTCCGCGCGTTCGATCCGGT 265
                      **************** *******************************************

consensus_4949#0      GATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCT 720
consensus_4949#1      GATCGTGCGGCTCAGCCTCGACTCGACGAACGTGCAGCACGAAAAGCTCGTGTTCGAGCT 325
                      ************************************************************

consensus_4949#0      GGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGA 780
consensus_4949#1      GGTAAAACCGTACATCGAAGGGTTCAGCGTGAAGGCGCAAGGTGCGGACGCGGAAGTGGA 385
                      ************************************************************

consensus_4949#0      AACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGC 840
consensus_4949#1      AACGCCGAAGCGCAAAGGCGAGCCGCAGCAGACTACGAAGTCGAAGAAAAACAAGAAGGC 445
                      ************************************************************

consensus_4949#0      AAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCC 900
consensus_4949#1      AAAGTAAGGAAATTGTAATCAAACATGTTTTTTAGAATAAACGCGTTAACGCTCCTCCCC 505
                      ************************************************************

consensus_4949#0      TACTAAAAAAAAAAAAAAA 919
consensus_4949#1      TAG---------------- 508
                      **