cluster # 496

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Anopheles gambiae
cluster # 496 cluster # 496 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_496#0 length = 580 sequences # 1

consensus_496#1 length = 544 sequences # 1

consensusID : consensus_496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAAAACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTTTTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAACATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACATACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTGCAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC]

[+] EMBL BX615813             [AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAAAACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTTTTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAACATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACATACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTGCAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC]




>consensus_496#0
AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAA
AACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTT
TTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAA
CATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACAT
ACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATA
ATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATA
GTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTG
CAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGA
AAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC

consensusID : consensus_496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAGTAAAAATAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACATTGAAATGTTGAGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTGCAGCAGCGCGAAAGGAAGAGATAGAGAGTGGGTATAAAGATAGGCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGCGAAAATACACACACAAGCAGCGAACCAAAATTCTTATGATTAAAACAAACTAAAAAGTAAGCTTAACTAAAACCCATTTTATATAAGCAGATATCTCTTTAAAGGAAAAAAAAACAAAACAAACAACGAAACAAACAAGCAAGCGTAGCAAAATGGACAAGGCAGGCTCGTATATTAAACGCTAGTAATTAGACAAACACACTCCCACACACACACACACACACACCCACACACACACACACAC]

[+] EMBL BM622714             [CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAATATTAATAATAATAGTAAAAATAATAATAATAATAATAATAATAATAAAAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACATTGAAATGTTGAGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTGCAGCAGCGCGAAAGGAAGAGATAGAGAGTGGGTATAAAGATAGGCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGCGAAAATACACACACAAGCAGCGAACCAAAATTCTTATGATTAAAACAAACTAAAAAGTAAGCTTAACTAAAACCCATTTTATATAAGCAGATATCTCTTTAAAGGAAAAAAAAACAAAACAAACAACGAAACAAACAAGCAAGCGTAGCAAAATGGACAAGGCAGGCTCGTATATTAAACGCTAGTAATTAGACAAACACACTCCCACACACACACACACACACACCCACACACACACACACAC]




>consensus_496#1
CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATAATAATAATGAAAATAATAAT
ATTAATAATAATAGTAAAAATAATAATAATAATAATAATAATAATAAAAATAATAATAAT
AATAATAATGATACAAATAATAATAATGAAAATAGTAATAATAATAACATTGAAATGTTG
AGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTGCAGCAGCGCGAAAGGAAGAGATAGAG
AGTGGGTATAAAGATAGGCATAGAAAAAGAAAGAAAGAGAAAGAAGAAAGAGAGAAGAGC
GAAAATACACACACAAGCAGCGAACCAAAATTCTTATGATTAAAACAAACTAAAAAGTAA
GCTTAACTAAAACCCATTTTATATAAGCAGATATCTCTTTAAAGGAAAAAAAAACAAAAC
AAACAACGAAACAAACAAGCAAGCGTAGCAAAATGGACAAGGCAGGCTCGTATATTAAAC
GCTAGTAATTAGACAAACACACTCCCACACACACACACACACACACCCACACACACACAC
ACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_496#0      AAGCAAGAGGCTGCGAAGAACGATGGCAACACATAGAATTAAGCGAAGTCCGCAAAAAAA 60
consensus_496#1      ------------------------------------------------------------
                                                                                 

consensus_496#0      AACCCCCCTTTCCCGAATTTCTTCCTCTTTTGGATAGCGTACAGGAGCGGCCGGCCGGTT 120
consensus_496#1      ------------------------------------------------------------
                                                                                 

consensus_496#0      TTGCCTACCCGTGTGCAAAAAGGGGCCGGTAGTGTGTGTGTGGCGCGTGTGTGAAGCGAA 180
consensus_496#1      ------------------------------------------------------------
                                                                                 

consensus_496#0      CATGAGTGTTGTAGTTAAATGAAGAAAGAGAGGGAGAGAGAGAGAGAAACTCACACACAT 240
consensus_496#1      ------------------------------------------------------------
                                                                                 

consensus_496#0      ACGCTAACCAGATAGCGAAAGCAGAACTACAAGGGGGAAAAAATCGCAGAAGAAATAATA 300
consensus_496#1      --------------------CCGCCCACGCGTCCGGAAAAAAATCGCAGAAGAAATAATA 40
                                          *       *    ** ***********************

consensus_496#0      ATAATAATGAAAATAATAATATTAATAATAATAATAAAAATAATAATAATAATAATAATA 360
consensus_496#1      ATAATAATGAAAATAATAATATTAATAATAATAGTAAAAATAATAATAATAATAATAATA 100
                     ********************************* **************************

consensus_496#0      ATAATAATAATAATAATAATAATAATAATAATAATGATACAAATAATAATAATGAAAATA 420
consensus_496#1      ATAATAAAAATAATAATAATAATAATAAT------GATACAAATAATAATAATGAAAATA 154
                     ******* *********************      *************************

consensus_496#0      GTAATAATAATAACAGTGAAATGTTGAGAGACATAGTAGCGGCAGAGGGAAGCAGCAGTG 480
consensus_496#1      GTAATAATAATAACATTGAAATGTTGAGAGACACAGTAGCGGCAGAGGGAAGCAGCAGTG 214
                     *************** ***************** **************************

consensus_496#0      CAACAGCGCGAAAGGAAAAGATAGAGAGTGGGTAAAAAGATAGCCATAGAAAAAGAAAGA 540
consensus_496#1      CAGCAGCGCGAAAGGAAGAGATAGAGAGTGGGTATAAAGATAGGCATAGAAAAAGAAAGA 274
                     ** ************** **************** ******** ****************

consensus_496#0      AAGAGAAAGAAGAAAGAGAGAAGAGGGAAAATACACACAC-------------------- 580
consensus_496#1      AAGAGAAAGAAGAAAGAGAGAAGAGCGAAAATACACACACAAGCAGCGAACCAAAATTCT 334
                     ************************* **************                    

consensus_496#0      ------------------------------------------------------------
consensus_496#1      TATGATTAAAACAAACTAAAAAGTAAGCTTAACTAAAACCCATTTTATATAAGCAGATAT 394
                                                                                 

consensus_496#0      ------------------------------------------------------------
consensus_496#1      CTCTTTAAAGGAAAAAAAAACAAAACAAACAACGAAACAAACAAGCAAGCGTAGCAAAAT 454
                                                                                 

consensus_496#0      ------------------------------------------------------------
consensus_496#1      GGACAAGGCAGGCTCGTATATTAAACGCTAGTAATTAGACAAACACACTCCCACACACAC 514
                                                                                 

consensus_496#0      ------------------------------
consensus_496#1      ACACACACACACCCACACACACACACACAC 544