cluster # 4963

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Anopheles gambiae
cluster # 4963 cluster # 4963 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4963#0 length = 999 sequences # 1

consensus_4963#1 length = 747 sequences # 2
consensus_4963#2 length = 175 sequences # 1

consensusID : consensus_4963#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 999
fasta sequence

                              [CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTATTGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGTGTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTCTACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGAGACNTGTGTNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGACACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGTGGCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGACCCTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCGAAATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCANATAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCCGNNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGCNATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCAAANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCCGNCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACACGCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN]

[+] EMBL AL929925             [CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTATTGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGTGTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTCTACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGAGACNTGTGTNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGACACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGTGGCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGACCCTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCGAAATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCANATAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCCGNNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGCNATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCAAANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCCGNCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACACGCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN]




>consensus_4963#0
CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACT
CGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTT
TCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTAT
TGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGT
GTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTC
TACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGAGACNTGTG
TNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGAC
ACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGTG
GCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGACC
CTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCGA
AATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCANA
TAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCCG
NNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGCN
ATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCAA
ANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCCG
NCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACAC
GCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN

consensusID : consensus_4963#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 747
fasta sequence

                              [GTTCGGTGCCGGAATAAAACAAGTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCGTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCGGGCGAAAACTCTTCAAATCTCTTTACAAAAAGATGGTCGCCCCAAACTTTCACTCCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGAAGGACTCGGTCCTGTTCTACATCGGCCAGAACAAGGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCACCGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGGTGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGAAGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGCAGCGTAGGAACCGCACGGAAACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAATACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGCGTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTATAATATTTTTTGAAAATAAATACAATC]

[+] EMBL BX623115             [GTTCGGTGCCGGAATAAAACAAGTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCGTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCGGGCGAAAACTCTTCAAATCTCTTTACAAAAAGATGGTCGCCCCAAACTTTCACTCCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGAAGGACTCGGTCCTGTTCTACATCGGCCAGAACAAGGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCACCGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGGTGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGAAGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGCAGCGTAGGAACCGCACGGAAACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAATACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGCGTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTATAATATTTTTTGAAAATAAATACAATC]
[+] EMBL AGA282088            [                                                                                                                                     ACCCTTCAAATCTCTTTACACAAAGATGGTCGCCCCAAACTTTCACTCCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGAAGGACTCGGTCCTGTTCTACATCGGCCAGGACAAGGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCACCGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGGTGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGAAGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGCAGCGTAGGAACCGCACGGAAACTGAATA                                                                                                                                                                                  ]




>consensus_4963#1
GTTCGGTGCCGGAATAAAACAAGTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAA
TCGATTGCTTTTAAAGGACAATCACAAAGCGTTCTGCGAAAAGCTTCGCCCTTACATCCA
CTGCCGGGCGAAAACTCTTCAAATCTCTTTACAAAAAGATGGTCGCCCCAAACTTTCACT
CCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGA
AGGACTCGGTCCTGTTCTACATCGGCCAGAACAAGGCGGAAACGTTCGACGAGATGGCGG
TAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCAC
CGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGG
TGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGA
AGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAG
CAGCGTAGGAACCGCACGGAAACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAAT
ACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGC
GTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTA
TAATATTTTTTGAAAATAAATACAATC

consensusID : consensus_4963#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [AGGACAAGGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAACGCAAACAACGGCACGGAAGTGCGGGGCACGACCATTATCGGCCCACCGGACGGGAGCGGAGCGCAGGAACTGGCCCAGCGGCGGGCCAAAAGGCGCAAGAAACAGGGGGACCTGAGTCCTGGCCCGGC]

[+] EMBL BX611344             [AGGACAAGGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAACGCAAACAACGGCACGGAAGTGCGGGGCACGACCATTATCGGCCCACCGGACGGGAGCGGAGCGCAGGAACTGGCCCAGCGGCGGGCCAAAAGGCGCAAGAAACAGGGGGACCTGAGTCCTGGCCCGGC]




>consensus_4963#2
AGGACAAGGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAACGCAAACAACGGCA
CGGAAGTGCGGGGCACGACCATTATCGGCCCACCGGACGGGAGCGGAGCGCAGGAACTGG
CCCAGCGGCGGGCCAAAAGGCGCAAGAAACAGGGGGACCTGAGTCCTGGCCCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4963#1      ---------------------------GTTCGGTGCCGGAATAAAA-CAAGTTCAACACT 32
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACT 60
                                                                                  

consensus_4963#1      CGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCGT 92
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      CGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTT 120
                                                                                  

consensus_4963#1      TCTGCGAAAAGCTTCGCCCTTACATCCACTGCCGGGCGAAAACTCTTCAAATCTCTTTA- 151
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      TCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTAT 180
                                                                                  

consensus_4963#1      --CAAAAAGATGGT---CGCCCCAAACTTTCACTCCCATCTCGC---CCAGGTAGAG-GT 202
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      TGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGT 240
                                                                                  

consensus_4963#1      GTGCGAGGTGCAGTACAACATACG-CGTGCTCAAGATG---AAGGACTCGGT-CCTGTTC 257
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      GTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTC 300
                                                                                  

consensus_4963#1      TACAT-CGGCCAGAACAA--GGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAAC 314
consensus_4963#2      -----------AGGACAA--GGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAAC 47
consensus_4963#0      TACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGA-GACNTGT 359
                                 ** ****  *   *****   **          *  *  ** * *    

consensus_4963#1      GCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCAC-------CGGACGG 367
consensus_4963#2      GCAAACAACGGCACGGAAGTGCGGGGCACGACCATTATCGGCCCAC-------CGGACGG 100
consensus_4963#0      GTNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGA 419
                      *  * * *  ** ** ** ***     ** **    *  **   *        *  * * 

consensus_4963#1      TAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAA-AAGGCTCAAGAAACAG----GTG 422
consensus_4963#2      GAGCGGAGCGCAGGAACTGGCCCAGCGGCGGGCCAA-AAGGCGCAAGAAACAG----GGG 155
consensus_4963#0      CACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGT 479
                       *           ** *   **  *   * * *  *   *    *  *  *         

consensus_4963#1      TACCTGAGTCTTGGCTCGTCCGTCCC-GAACGATCGTATTGTGCGGCCGTCGATCGAGAA 481
consensus_4963#2      GACCTGAGTCCTGGCCCGGC---------------------------------------- 175
consensus_4963#0      GGCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGAC 539
                        **  *     * *    *                                        

consensus_4963#1      GAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGC 541
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      CCTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCG 599
                                                                                  

consensus_4963#1      AGCGTAGGAACCGCACGGAA-ACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAAT 600
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      AAATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCAN 659
                                                                                  

consensus_4963#1      ACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGC 660
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      ATAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCC 719
                                                                                  

consensus_4963#1      GTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTA 720
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      GNNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGC 779
                                                                                  

consensus_4963#1      TAATATTTTTTGAAAATAAATACAATC--------------------------------- 747
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      NATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCA 839
                                                                                  

consensus_4963#1      ------------------------------------------------------------
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      AANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCC 899
                                                                                  

consensus_4963#1      ------------------------------------------------------------
consensus_4963#2      ------------------------------------------------------------
consensus_4963#0      GNCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACA 959
                                                                                  

consensus_4963#1      ----------------------------------------
consensus_4963#2      ----------------------------------------
consensus_4963#0      CGCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN 999