cluster # 4969

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Anopheles gambiae
cluster # 4969 cluster # 4969 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4969#0 length = 643 sequences # 3

consensus_4969#1 length = 337 sequences # 1

consensusID : consensus_4969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 643
fasta sequence

                              [GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTTGATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCGACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATGATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAAGCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTCCGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAATGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGAC--AGAGAGAGAGGGTTCACGGTCCGTTTTTACCCTCTTGGAATGTC---GTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCTATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA]

[+] EMBL BX621663             [GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTTGATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCGACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATGATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAAGCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTCCGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAATGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGAC  AGAGAGAGAGGGTTCACGGTCCGTTTTTACCCTCTTGGAATGTC   GTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCTATATT                                      ]
[+] EMBL AGA282114            [                                                                                                                               AATCTTTCCTTCTGTACCCCCGAGAGAAGAAAATTAACAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAAGCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTCCGGG                                                                                                                                                                                                                                ]
[-] EMBL AGA284391            [                                                                                                                                                                                                                                                                                                                                                                                                                   TGTTCGAGGAACGGTTCCGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGTGATTAGGATTATTTCGGATACACCAAATGGCGGGAGGGGAGAGTAGGTGAGCAGCGGGACAGAGAGAGAGAGGGTTCACGGTCCGTTTTTACCCTCTTGGAATGTCGGTGTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCTATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA]




>consensus_4969#0
GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTT
GATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCG
ACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATG
AAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATG
ATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCAC
CCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAA
GCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTC
CGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAA
TGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGACAGAGAGAGAGGGTTCACGGTCCGTTTT
TACCCTCTTGGAATGTCGTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCT
ATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA

consensusID : consensus_4969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGCAAGTGAGTATTTCATTGAGCGGCTTTTTCGGGCCATTGATGAACCATGCCACGGGATTTTGATTTACATGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTATGGCTTCTCCTCCTCTTCATCCTTCCGCGCCCCCTGCAGCCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT]

[+] EMBL AGA285697            [GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGCAAGTGAGTATTTCATTGAGCGGCTTTTTCGGGCCATTGATGAACCATGCCACGGGATTTTGATTTACATGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTATGGCTTCTCCTCCTCTTCATCCTTCCGCGCCCCCTGCAGCCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT]




>consensus_4969#1
GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTT
CCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGC
AAGTGAGTATTTCATTGAGCGGCTTTTTCGGGCCATTGATGAACCATGCCACGGGATTTT
GATTTACATGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTATGGCTTCTCCTCCT
CTTCATCCTTCCGCGCCCCCTGCAGCCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTG
GCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4969#0      GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTT 60
consensus_4969#1      ------------------------------------------------------------
                                                                                  

consensus_4969#0      GATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCG 120
consensus_4969#1      ------------------------------------------------------------
                                                                                  

consensus_4969#0      ACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATG 180
consensus_4969#1      ------GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATG 54
                            ******************************************************

consensus_4969#0      AAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATG 240
consensus_4969#1      AAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATG 114
                      ************************************************** *********

consensus_4969#0      ATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCAC 300
consensus_4969#1      ATTCGCAAGTGAGTATTTCA----TTGAGCGGCTTTTTCG--GGCCATTGATGAACCATG 168
                      ********     *  *  *      ** **   * ****  *** *   *    **   

consensus_4969#0      CCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAA 360
consensus_4969#1      CCACGGGATTTTGA-TTTACA-TGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTA 226
                      ** *  **     * **   * ******  *   *              *** **  * *

consensus_4969#0      GCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTC 420
consensus_4969#1      TGGCTTCTCCTCCTCTTCATCCTTCCGCGCCCC---CTGCAGCCAGCTGCTGAAGGATCC 283
                        * *  *   *  * *** *  ** **   **   ***   *     *  *** * * *

consensus_4969#0      CGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAA 480
consensus_4969#1      --GAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT---- 337
                        * * * * **   *      *  *   *  * *   *    *   *   * *      

consensus_4969#0      TGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGACAGAGAGAGAGGGTTCACGGTCCGTTTT 540
consensus_4969#1      ------------------------------------------------------------
                                                                                  

consensus_4969#0      TACCCTCTTGGAATGTCGTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCT 600
consensus_4969#1      ------------------------------------------------------------
                                                                                  

consensus_4969#0      ATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA 643
consensus_4969#1      -------------------------------------------