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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1591 fasta sequence
[AAAACAGATTCATTTTAACATGTTTATTTGCCTTTACAGTGACCTTTACAGTGTTTGCTTGCTAGAACTATAAAAACACACACCAACATGCACGAACTCACACGTATACAAACATCGACCGATTGTGGAGCATTCGTTTTTGTACAAGTTACACACAACAGAATCTTTGCCGTTTATTCTTCGGATCATTGGAAGTTTAATTTCATTGCACAGACGGAAGAGCTAACTAATACTGACTAGAATTTTGGTTCCATCGCATCCCTTCACAGAAACATTCTCGTCTTGGGAACTTCCTAAACGTAGCTACTACGGACGGGTCTTACAGAGATGTGGTACACTTGGAGGGGGATGGAGGGCGGGGAGGAAAGGCCGGATGTGAGAAGCACTATTTACAAGATATGATATACATGTACACCACAGCCAACATTGTGACGTGAAATCATGGTTTTTTTCGGTTGGTTTCAGTCGAAGGCTCTATCTGGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTAAACCTTCTCGATCTCCGTCTGTTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCAACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGAGCAGCACAGCTGGCGGAACACGCAAAAAAAAAAAGCCAGCAGCGAGGTCATCAGGATCGTGCCGATGATCACGGTAATGACCAGCAGCCCGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTTTAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTTTGTGTTTTGTTGGTACGGGAAGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCCTCGGACACGTTCAGTACAATACTATCCTCATACAGTTCTCAAATTATTTCATCTTTATCACCGCCCGTTGGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCTGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGTGAAATGTTCCACCTTCGCGAGAATTGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTACCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGAT-CACCGTGTTCCTTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAGCGACTGTGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTGCAGAAAATGTAAATGAAATGCTTGCGGCACCAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTGCACGCAATAGTACGA--ACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAAAGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGACCGTCAAA]
[+] EMBL CNS098WV [AAAACAGATTCATTTTAACATGTTTATTTGCCTTTACAGTGACCTTTACAGTGTTTGCTTGCTAGAACTATAAAAACACACACCAACATGCACGAACTCACACGTATACAAACATCGACCGATTGTGGAGCATTCGTTTTTGTACAAGTTACACACAACAGAATCTTTGCCGTTTATTCTTCGGATCATTGGAAGTTTAATTTCATTGCACAGACGGAAGAGCTAACTAATACTGACTAGAATTTTGGTTCCATCGCATCCCTTCACAGAAACATTCTCGTCTTGGGAACTTCCTAAACGTAGCTACTACGGACGGGTCTTACAGAGATGTGGTACACTTGGAGGGGGATGGAGGGCGGGGAGGAAAGGCCGGATGTGAGAAGCACTATTTACAAGATATGATATACATGTACACCACAGCCAACATTGTGACGTGAAATCATGGTTTTTTTCGGTTGGTTTCAGTCGAAGGCTCTATCTGGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTAAACCTTCTCGATCTCCGTCTGTTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCAACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGA CAGCACAGCTGGCGGAACACGCAAAAAAAAAAAGCCAGCAGCGAGGTCATCAGGATCGTGCCGATGATCACGGTAATGACCAGCAGCCCGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTTTAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTTTGTGTTTTGTTGGTACGGGAAGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCCTCGGACACGTTCAGTACAATACTATCCTCATACAGTTCTCAAATTATTTCATCTTTATCACCGCCCGTTGGTCGGTTCGTTGTCTCTT ]
[-] EMBL BX618371 [ ccGTCGAAGGCTCTTTCTGGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTTACCCTTCTCGATCTCCGTCTGCTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCAACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGAGCAGCACAGCTGG ]
[-] EMBL CNS098WU [ TCCGGTCGAGGTCCATATCGCGCGAGCAGCACAGCTGGCGGAACACGCAGATGTAGCAGGCCAGCAGCGAGGTCATCAGGATCGTGCCGATGATCACGGTAATGACCAGCAGCACGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTTTAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTGTGTGTGTTGTTGGTACGGGAAGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCCTCGGACACGTTCAGTTTTTTTTTTTCCTCATACAGTTCTCAAATTATTTCATCTTTATCACCGCCCGTT GTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCTGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGTGAAATGTTCCACCTTCGCGAGAATTGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTACCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGATCCACCGTGTTCCTTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAGCGACTGTGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTGCAGAAAATGTAAATGAAATGCTTGCGGCACCAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTGCACGCAATAGTACGAACACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAAAGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGACCGTCAAA]
consensusID : consensus_4985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[ATTATTTCATCTTTATCACCGCCCGTTGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCGGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGAGAAATGTTCCACCTTCGCGAGAAATGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTATCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGATCACCGTGTTCCCTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAACGACTGCGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTACAGAAAATGTAAATGAAATATGCTTGCGGCACTAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTTTCACGCAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAACGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGCCCACGCGTCCGCGG]
[-] EMBL BM646280 [ATTATTTCATCTTTATCACCGCCCGTTGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCGGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGAGAAATGTTCCACCTTCGCGAGAAATGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTATCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGATCACCGTGTTCCCTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAACGACTGCGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTACAGAAAATGTAAATGAAATATGCTTGCGGCACTAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTTTCACGCAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAACGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGCCCACGCGTCCGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4985#0 AAAACAGATTCATTTTAACATGTTTATTTGCCTTTACAGTGACCTTTACAGTGTTTGCTT 60
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 GCTAGAACTATAAAAACACACACCAACATGCACGAACTCACACGTATACAAACATCGACC 120
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 GATTGTGGAGCATTCGTTTTTGTACAAGTTACACACAACAGAATCTTTGCCGTTTATTCT 180
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 TCGGATCATTGGAAGTTTAATTTCATTGCACAGACGGAAGAGCTAACTAATACTGACTAG 240
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 AATTTTGGTTCCATCGCATCCCTTCACAGAAACATTCTCGTCTTGGGAACTTCCTAAACG 300
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 TAGCTACTACGGACGGGTCTTACAGAGATGTGGTACACTTGGAGGGGGATGGAGGGCGGG 360
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 GAGGAAAGGCCGGATGTGAGAAGCACTATTTACAAGATATGATATACATGTACACCACAG 420
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 CCAACATTGTGACGTGAAATCATGGTTTTTTTCGGTTGGTTTCAGTCGAAGGCTCTATCT 480
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 GGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTAAACCTTCT 540
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 CGATCTCCGTCTGTTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCA 600
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 ACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGAGCAGC 660
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 ACAGCTGGCGGAACACGCAAAAAAAAAAAGCCAGCAGCGAGGTCATCAGGATCGTGCCGA 720
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 TGATCACGGTAATGACCAGCAGCCCGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTT 780
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 TAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTTTGTGTTTTGTTGGTACGGGA 840
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 AGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCC 900
consensus_4985#1 ------------------------------------------------------------
consensus_4985#0 TCGGACACGTTCAGTACAATACTATCCTCATACAGTTCTCAAATTATTTCATCTTTATCA 960
consensus_4985#1 ------------------------------------------ATTATTTCATCTTTATCA 18
******************
consensus_4985#0 CCGCCCGTTGGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCTGGCT 1020
consensus_4985#1 CCGCCCGTTG-TCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCGGGCT 77
********** ******************************************** ****
consensus_4985#0 TCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGTGAAATGTTCCACC 1080
consensus_4985#1 TCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGAGAAATGTTCCACC 137
********************************************** *************
consensus_4985#0 TTCGCGAGAATTGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTACCACTG 1140
consensus_4985#1 TTCGCGAGAAATGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTATCACTG 197
********** ******************************************* *****
consensus_4985#0 CTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTA 1200
consensus_4985#1 CTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTA 257
************************************************************
consensus_4985#0 ATGGATGTACGTGGGATCACCGTGTTCCTTTGTACCACGGTCAACACACCGTTTCCAACG 1260
consensus_4985#1 ATGGATGTACGTGGGATCACCGTGTTCCCTTGTACCACGGTCAACACACCGTTTCCAACG 317
**************************** *******************************
consensus_4985#0 AATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAGCGACTGTG 1320
consensus_4985#1 AATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAACGACTGCG 377
*************************************************** ****** *
consensus_4985#0 TTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTT 1380
consensus_4985#1 TTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTT 437
************************************************************
consensus_4985#0 GCAGAAAATGTAAATGAAAT--GCTTGCGGCACCAGCTAGGGGGGATGGTTTCTGCGCGC 1438
consensus_4985#1 ACAGAAAATGTAAATGAAATATGCTTGCGGCACTAGCTAGGGGGGATGGTTTCTGCGCGC 497
******************* *********** **************************
consensus_4985#0 TACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTG-CACG 1497
consensus_4985#1 TACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTTTCACG 557
****************************************************** ****
consensus_4985#0 CAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAAAGACGGTACGGCC 1557
consensus_4985#1 CAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAACGACGGTACGGCC 617
*********************************************** ************
consensus_4985#0 TCGGTAACGGGATGCGCACTCACAGACCGTCAAA------ 1591
consensus_4985#1 TCGGTAACGGGATGCGCACTCACAGCCCACGCGTCCGCGG 657
************************* **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||