cluster # 4987

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Anopheles gambiae
cluster # 4987 cluster # 4987 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4987#0 length = 1048 sequences # 3

consensus_4987#1 length = 564 sequences # 1

consensusID : consensus_4987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1048
fasta sequence

                              [CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGCTGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAGCTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGTGATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCCTCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGCAAAAGCAGCGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTCCAGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTTTTTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTACATGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATGATGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTTCCGGNGTAAAAGTTTTAGCCTTTTAAGTG]

[+] EMBL AGA282706            [CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGCTGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAGCTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM609440             [                                                                              cCGGCGGAAATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAGCTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGTGATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCCTCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCT                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX624490             [                                                                                                                                                                                                                                                                                                                                                                                                                   CGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCCTCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTTGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGCAAAAGCAGCGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTCCAGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTTTTTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTACATGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATGATGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTTCCGGNGTAAAAGTTTTAGCCTTTTAAGTG]




>consensus_4987#0
CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGC
TGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAG
CTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGT
GATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAG
AACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGC
CGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAG
CGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTAC
CCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTC
GGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCG
AAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCC
TCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTG
CTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGCAAAAGCAG
CGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTCC
AGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTTT
TTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTACA
TGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATGA
TGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTTC
CGGNGTAAAAGTTTTAGCCTTTTAAGTG

consensusID : consensus_4987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [AGGCAGAATCGGCACGATGGGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCTCTACCGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCAGCGATTCACCAAGCGAATCAAAAGGATCCTTAAACTCCTCCCCCACAA]

[+] EMBL BX467827             [AGGCAGAATCGGCACGATGGGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCTCTACCGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCAGCGATTCACCAAGCGAATCAAAAGGATCCTTAAACTCCTCCCCCACAA]




>consensus_4987#1
AGGCAGAATCGGCACGATGGGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGC
GAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCG
GATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGT
CGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTA
CGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCC
GACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAA
TCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCTCTACCGCGTCCGCCGGCATGGGG
CATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATC
CACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCAGCGATTCACCAAGCGAATCAAAAG
GATCCTTAAACTCCTCCCCCACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4987#0      CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGC 60
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      TGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAG 120
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      CTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGT 180
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      GATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAG 240
consensus_4987#1      ----------------------AGGCAGAATCGGCA-CGATGGGCGAACCTTCCCGCGAG 37
                                            ***     ** * * **    *****************

consensus_4987#0      AACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGC 300
consensus_4987#1      AACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGC 97
                      ************************************************************

consensus_4987#0      CGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAG 360
consensus_4987#1      CGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAG 157
                      ************************************************************

consensus_4987#0      CGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTAC 420
consensus_4987#1      CGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTAC 217
                      ************************************************************

consensus_4987#0      CCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTC 480
consensus_4987#1      CCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTC 277
                      ************************************************************

consensus_4987#0      GGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCG 540
consensus_4987#1      GGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCG 337
                      ************************************************************

consensus_4987#0      AAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCC 600
consensus_4987#1      AAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGC- 396
                      ****************************************** **************** 

consensus_4987#0      TCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTG 660
consensus_4987#1      TCTACCGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTG 456
                      ***** ******************************************************

consensus_4987#0      CTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCG-CAAAAGCA 719
consensus_4987#1      CTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCA 516
                      *************************************************** ********

consensus_4987#0      GCGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTC 779
consensus_4987#1      GCGATTCACCAAGCGAATCAAAA-GGATCCTTAAACTCCTCCCCCACAA----------- 564
                      *********************** ********************* *             

consensus_4987#0      CAGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTT 839
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      TTTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTAC 899
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      ATGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATG 959
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      ATGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTT 1019
consensus_4987#1      ------------------------------------------------------------
                                                                                  

consensus_4987#0      CCGGNGTAAAAGTTTTAGCCTTTTAAGTG 1048
consensus_4987#1      -----------------------------