cluster # 4991

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Anopheles gambiae
cluster # 4991 cluster # 4991 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4991#0 length = 1046 sequences # 3

consensus_4991#1 length = 486 sequences # 1

consensusID : consensus_4991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1046
fasta sequence

                              [CAGCGCAACAGTGTAGCACAAACCATGGCCGATATCGAAAACACGGCCGAGCTGCGGAGATAAACATGATTGGATAAACGCGAACAGAGAAAAAAAGGCCAGGCAAATGAGCCCGCAGAAGTGATTTAAATAGTGTGTGCGTAACGCGCGTTCTGTGCTTTACAGAATATTATTTATTAGTAAAAGCGGCAAATTGGGCGAATCTCTATAAACACATCTCTCTCTCTCTCCCTTTCTCTATCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTAATATCTCACACTCACTTGAATAATTTTGCAATATATGGAGAAAACATTTCTCCCCATTTTTTTTTACCTGTTACGTAGCTGCACTAGGTTATCGTATTGTTTTTTTTTTATTAGAAATTTAAGTTCTTCTCGAATAAATTTGTTGGGAGCTTCTTCCTTCTTTTTATCATATCATTGAGGGCGTCGGGTGATGGGGTAAAATCGAACAGGGAAAGAGCGTACAGAAGAAAGAGTAGCTTAGTTAATAGAAGTAGAGACGTGCCAATACACATTTTGGGACAGCTTCGGGTTGAAGACGTTGGAAACGCGAAGGGTCTTGGACATCGTACACACCGAATCGATTGTTTTTTTTTTGTAGGAATCCGGTCATGTTATGCTATCGAAGAGTAGTTGAAATTTCTCCTTATGATCGCGGACACCTTTTCAATGTTGAATCAGCTATTTTTTTATTATTTTAGTTGATAAGGTGCATTAACAGCATTCACTTTTTAAATAGATATCTCATGGGAGTGGGGCCATGGGCCTGCAGAACAACAACACATACACACAAACACGCTACCGTAGCT]

[+] EMBL BX621349             [CAGCGCAACAGTGTAGCACAAACCATGGCCGATATCGAAAACACGGCCGAGCTGCGGAGATAAACATGATTGGATAAACGCGAACAGAGAAAAAAAGGCCAGGCAAATGAGCCCGCAGAAGTGATTTAAATAGTGTGTGCGTAACGCGCGTTCTGTGCTTTACAGAATATTATTTATTAGTAAAAGCGGCAAATTGGGCGAATCTCTATAAACACATCTCTCTCTCTCTCCCTTTCTCTATCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTAATATCTCACACTCACTTGAATAATTTTGCAATATATGGAGAAAACATTTCTCCCCATTTTTTTTTACCTGTTACGTAGCTGCACTAGGTTATCGTATTGTTTTTTTTTTATTAGAAATTTAAGTTCTTCTCGAATAAATTTGTTGGGAGCTTCTTCCTTCTTTTTATCATATCATT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX617525             [                                                                                                                                                                                                                                                                        GTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTAATATCTCACACTCACTTGAATAATTTTGCAATATATGGAGAAAACATTTCTCCCCATTTTTTTTTACCTGTTACGTAGCTGCACTAGGTTATCGTATTGTTTTTTTTTTATTAGAAATTTAAGTTCTTCTCGAATAAATTTGTTGGGAGCTTCTTCCTTCTTTTTATCATATCATTGAGGGCGTCGGGTGATGGGGTAAAATCGAACAGGGAAAGAGCGTACAGAAGAAAGAGTAGCTTAGTTAATAGAAGTAGAGACGTGCCAATACACATTTTGGGACAGCTTCGGGTTGAAGACGTTGGAAACGCGAAGGGTCTTGGACATCGTACACACCGAATCGATTGTTTTTTTTTTGTAGGAATCCGGTCATGTTATGCTATCGAAGAGTAGTTGAAATTTCTCCTTATGATCGCGGACACCTTTT                                                                                                                                              ]
[-] EMBL AGA282813            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGACGTGCCAATACACATTTTGGGACAGCTTCGGGTTGAAGACGTTGGAAACGCGAAGGGTCTTGGACATCGTACACACCGAATCGATTGTCTTTTTTTTGTAGGAATCCGGTCATGTTATGCTATCGAAGAGTAGTTGAAATTTCTCCTTATGATCGCGGACACCTTTTCAATGTTGAATCAGCTATTTTTTTATTATTTTAGTTGATAAGGTGCATTAACAGCATTCACTTTTTAAATAGATATCTCATGGGAGTGGGGCCATGGGCCTGCAGAACAACAACACATACACACAAACACGCTACCGTAGCT]




>consensus_4991#0
CAGCGCAACAGTGTAGCACAAACCATGGCCGATATCGAAAACACGGCCGAGCTGCGGAGA
TAAACATGATTGGATAAACGCGAACAGAGAAAAAAAGGCCAGGCAAATGAGCCCGCAGAA
GTGATTTAAATAGTGTGTGCGTAACGCGCGTTCTGTGCTTTACAGAATATTATTTATTAG
TAAAAGCGGCAAATTGGGCGAATCTCTATAAACACATCTCTCTCTCTCTCCCTTTCTCTA
TCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGA
ATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCT
ACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCC
CCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTA
ATATCTCACACTCACTTGAATAATTTTGCAATATATGGAGAAAACATTTCTCCCCATTTT
TTTTTACCTGTTACGTAGCTGCACTAGGTTATCGTATTGTTTTTTTTTTATTAGAAATTT
AAGTTCTTCTCGAATAAATTTGTTGGGAGCTTCTTCCTTCTTTTTATCATATCATTGAGG
GCGTCGGGTGATGGGGTAAAATCGAACAGGGAAAGAGCGTACAGAAGAAAGAGTAGCTTA
GTTAATAGAAGTAGAGACGTGCCAATACACATTTTGGGACAGCTTCGGGTTGAAGACGTT
GGAAACGCGAAGGGTCTTGGACATCGTACACACCGAATCGATTGTTTTTTTTTTGTAGGA
ATCCGGTCATGTTATGCTATCGAAGAGTAGTTGAAATTTCTCCTTATGATCGCGGACACC
TTTTCAATGTTGAATCAGCTATTTTTTTATTATTTTAGTTGATAAGGTGCATTAACAGCA
TTCACTTTTTAAATAGATATCTCATGGGAGTGGGGCCATGGGCCTGCAGAACAACAACAC
ATACACACAAACACGCTACCGTAGCT

consensusID : consensus_4991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CCGGTTTTTTTTTTCTACACAACTCCTATGCCACCGCCTCATCCCATCCCATAGCGGACAGCAGGGGGGGATTGCTAAGCAAAAGTATTATAAAACCCCCCATTCTCCCTCGAACTCTGGGCGCGCAACGCGTTCTGTGCTTTACAGAATATTATTTATTAGTAAAAGCTGCAATTCGGGCGAATCTCTATAAACACATCTCTCTCTCTCTCTCTCTCCCTTTCTCTATCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTAATATCTCACACTCACTTG]

[+] EMBL BM644611             [CCGGTTTTTTTTTTCTACACAACTCCTATGCCACCGCCTCATCCCATCCCATAGCGGACAGCAGGGGGGGATTGCTAAGCAAAAGTATTATAAAACCCCCCATTCTCCCTCGAACTCTGGGCGCGCAACGCGTTCTGTGCTTTACAGAATATTATTTATTAGTAAAAGCTGCAATTCGGGCGAATCTCTATAAACACATCTCTCTCTCTCTCTCTCTCCCTTTCTCTATCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTAATATCTCACACTCACTTG]




>consensus_4991#1
CCGGTTTTTTTTTTCTACACAACTCCTATGCCACCGCCTCATCCCATCCCATAGCGGACA
GCAGGGGGGGATTGCTAAGCAAAAGTATTATAAAACCCCCCATTCTCCCTCGAACTCTGG
GCGCGCAACGCGTTCTGTGCTTTACAGAATATTATTTATTAGTAAAAGCTGCAATTCGGG
CGAATCTCTATAAACACATCTCTCTCTCTCTCTCTCTCCCTTTCTCTATCTCTCTTTATC
TTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAGCAAGGAATGCTACAGTTT
CGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTATTTAGCTACTTACAGTAGA
TATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATACGCCCCCCCAATGTACCC
GAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATCTACGTAATATCTCACACT
CACTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4991#0      CAGCGCAACAGTGTAGCACAAACCATGGCCGATATCGAAAACACGGCCGAGCTGCGGAGA 60
consensus_4991#1      ----CCGGTTTTTTTTTTCTACACAACTCCTATGCCACCGCCTCATCCCATC--CCATAG 54
                           *     * *    * *  **   ** **  *     * *  ** * *  *     

consensus_4991#0      TAAACATGATTGGATAAACGCGAACAGAGAAAAAAAGGCCAGGCAAATGAGCCCGCAGAA 120
consensus_4991#1      CGGACA-------GCAGGGGGGGATTGCTAAGCAAAAGTATTATAA---AACCCCCCATT 104
                         ***         *   * * *  *  **  *** *      **   * *** *    

consensus_4991#0      GTGATTTAAATAGTGTGTGCGTAACGCGCGTTCTGTGCTTTACAGAATATTATTTATTAG 180
consensus_4991#1      CTCCCTCGAACTCTGGGCGCGCAACGCG--TTCTGTGCTTTACAGAATATTATTTATTAG 162
                       *   *  **   ** * *** ******  ******************************

consensus_4991#0      TAAAAGCGGCAAATTGGGCGAATCTCTATAAACACATCTCTCTCTCTCTC------CCTT 234
consensus_4991#1      TAAAAGCTGCAATTCGGGCGAATCTCTATAAACACATCTCTCTCTCTCTCTCTCTCCCTT 222
                      ******* **** * ***********************************      ****

consensus_4991#0      TCTCTATCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAG 294
consensus_4991#1      TCTCTATCTCTCTTTATCTTTCCCTCCATTGTAACAGTATGGTGCTTATGAGAATTCGAG 282
                      ************************************************************

consensus_4991#0      CAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTAT 354
consensus_4991#1      CAAGGAATGCTACAGTTTCGACAAAAAGAACCGTAGCGCATATATCGTATAACCTATTAT 342
                      ************************************************************

consensus_4991#0      TTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATA 414
consensus_4991#1      TTAGCTACTTACAGTAGATATCCTCCAACGGAGGGAACAAAATTGTATTATAACAATATA 402
                      ************************************************************

consensus_4991#0      CGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATC 474
consensus_4991#1      CGCCCCCCCAATGTACCCGAATCGCCAGGTGGAAACCACTTGCGCGGGAACATATTTATC 462
                      ************************************************************

consensus_4991#0      TACGTAATATCTCACACTCACTTGAATAATTTTGCAATATATGGAGAAAACATTTCTCCC 534
consensus_4991#1      TACGTAATATCTCACACTCACTTG------------------------------------ 486
                      ************************                                    

consensus_4991#0      CATTTTTTTTTACCTGTTACGTAGCTGCACTAGGTTATCGTATTGTTTTTTTTTTATTAG 594
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      AAATTTAAGTTCTTCTCGAATAAATTTGTTGGGAGCTTCTTCCTTCTTTTTATCATATCA 654
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      TTGAGGGCGTCGGGTGATGGGGTAAAATCGAACAGGGAAAGAGCGTACAGAAGAAAGAGT 714
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      AGCTTAGTTAATAGAAGTAGAGACGTGCCAATACACATTTTGGGACAGCTTCGGGTTGAA 774
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      GACGTTGGAAACGCGAAGGGTCTTGGACATCGTACACACCGAATCGATTGTTTTTTTTTT 834
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      GTAGGAATCCGGTCATGTTATGCTATCGAAGAGTAGTTGAAATTTCTCCTTATGATCGCG 894
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      GACACCTTTTCAATGTTGAATCAGCTATTTTTTTATTATTTTAGTTGATAAGGTGCATTA 954
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      ACAGCATTCACTTTTTAAATAGATATCTCATGGGAGTGGGGCCATGGGCCTGCAGAACAA 1014
consensus_4991#1      ------------------------------------------------------------
                                                                                  

consensus_4991#0      CAACACATACACACAAACACGCTACCGTAGCT 1046
consensus_4991#1      --------------------------------