These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 727 fasta sequence [AGGCCAGAATCGCCACGAGGTCATAAAATGAAAAACAAACAAAACAACCAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTT-TGTATCTTCTGCTACCTGT-TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCT-GTTCGCTTTTAA-GACTTTACTCAAAG-TGTGTTTC-GATGACACTG-CTATACACAT-ACACAC-ATCTTACATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAAAATCTTT] [+] EMBL BX466613 [AGGCCAGAATCGCCACGAGGTCATAAAATGAAAAACAAACAAAACAACCAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTNATGTGCCTTGTAGGTA TTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTTCTGTATCTTCTGCTACCTGTNTTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCTGGTTCGCTTTTAAGGACTTTACTCAAAGCTGTGTTACGGATNACACTGCCTATACACATAACACACAATCT ] [+] EMBL BX628291 [ AGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTT TGTATCTTCTGCTACCTGT TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCT GTTCGCTTTTAA GACTTTACTCAAAG TGTGTTTC GATGACACTG CTATACACAT ACACAC ATCTTACATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAAAATCTTT] [+] EMBL BX610671 [ CACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTT TGTATCTTCTGCTACCTGT TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCT GTTCGCTTTTAA GACTTTACTCAAAG TGTGTTTC GATGACACTG CTATACACAT ACACAC ATCTTACATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCGAAATGTAAA ] consensusID : consensus_5028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATCATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAAAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACA] [+] EMBL BX617589 [ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATCATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAAAAGGAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAGAACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGGAAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTGTTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAGTTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGCACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACGTGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTGTGACACTCTTACATAAGACTTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5028#0 ------------------------------------------------------------ consensus_5028#1 ACGGTTGGAAAAGAATGTTCTCTTTTTTATTTATTATATTTTTATACACAAAACACAATC 60 consensus_5028#0 -------AGGCCAGAATCGCCACGAGG-TCATAAAATGAAAAACAAACAAAACAACCAAG 52 consensus_5028#1 ATTAAAAGAAGGATAATAAAAATGAAAATCATAAAATGAAAAACAAACAAAACAA--AAG 118 * *** * ** *************************** *** consensus_5028#0 GAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAG 112 consensus_5028#1 GAAGTAATTGTGTGCAACGAACAAAAAAAAAGAGAAACAAAAGGGAATGAAAATGAGAAG 178 ************************************************************ consensus_5028#0 AACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGG 172 consensus_5028#1 AACAAATGAGGACTTGGTAACTGGAAATGGTAACCGAAAACAATCAAATAGAAGAACTGG 238 ************************************************************ consensus_5028#0 AAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTG 232 consensus_5028#1 AAAAGAAAAGTGAAAATGCTCTCCCCGTTTTGTGCTATTGTGGGGAAGTTGTTGCTCTTG 298 ************************************************************ consensus_5028#0 TTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAG 292 consensus_5028#1 TTATATCTTAGTATCACGATTGCACCGGGATATAAAACAAAGGTGGTCAAACAATTGAAG 358 ************************************************************ consensus_5028#0 TTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGC 352 consensus_5028#1 TTTTAAAGGTATTCTTTGTAACGGCCAGCGGCAGGAGTGCATAGTTTGATGCATTTCTGC 418 ************************************************************ consensus_5028#0 ACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACG 412 consensus_5028#1 ACTGTTCTCTCGATCCAGCTAGGATCTCCGTTTGGTTTGCTTTCATTGGAAAGTTGTACG 478 ************************************************************ consensus_5028#0 TGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTG 472 consensus_5028#1 TGTTGTAGCCACGTTTGCATTTCCCGTCTCGTATCATTTATGTGCCTTGTAGGTATTTTG 538 ************************************************************ consensus_5028#0 TGACACTCTTACATAAGACTTACATTGAATTGAGTTTAGTTTGTATCTTCTGCTACCTGT 532 consensus_5028#1 TGACACTCTTACATAAGACTTACA------------------------------------ 562 ************************ consensus_5028#0 TTTACACATAACGACGAAGAAAAACACACATGTGCGGTGTACAAATAATTCCTGTTCGCT 592 consensus_5028#1 ------------------------------------------------------------ consensus_5028#0 TTTAAGACTTTACTCAAAGTGTGTTTCGATGACACTGCTATACACATACACACATCTTAC 652 consensus_5028#1 ------------------------------------------------------------ consensus_5028#0 ATCTACAAAACTACTTCAACCAGGCTCCTTTGAAATGAACGAACAAAACAGTATCACGCG 712 consensus_5028#1 ------------------------------------------------------------ consensus_5028#0 AAATGTAAAATCTTT 727 consensus_5028#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||