cluster # 5032

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5032 cluster # 5032 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5032#0 length = 656 sequences # 3

consensus_5032#1 length = 345 sequences # 1

consensusID : consensus_5032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 656
fasta sequence

                              [CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAATAGCGCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCATCTATCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAATTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCACCACATTGTGAAATTAAGGA-GGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTCAGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA]

[+] EMBL BM623381             [CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAATAGCGCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCATCTATCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAATTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCACCACATTGTGAAATTAAGGACAAAAAACCGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTGGCACAGCCACCGGAAAACTCAGCTCCTGCTCAGGGAAGCTAAATAAAA                                       ]
[+] EMBL BX626299             [                                                                                            TTGGCTTANTTT CATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCACCACATTGTGAAATTAAAGA GGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTCANGGAAGCTAAATAAAAGCC                                    ]
[-] EMBL AGA284312            [                                                                                                                                                                                                                                                                                                                                                                     GCACCACATTGTGAAATTAAGGA GGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTCAGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA]




>consensus_5032#0
CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAATAGC
GCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTCGCAA
GAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCATCTA
TCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTG
GCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAATTGT
GGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTGTGCA
CCACATTGTGAAATTAAGGAGGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCCGGTG
TTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTCGGAT
CGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAGCGAG
AAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCTGCTC
AGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA

consensusID : consensus_5032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [TTTTTTAACCGATTTATCAACTAGTTCAACTTCAGGCTTGCATTTGCTACCCAGAAATAGCGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTGTGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG]

[+] EMBL AGA285615            [TTTTTTAACCGATTTATCAACTAGTTCAACTTCAGGCTTGCATTTGCTACCCAGAAATAGCGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTCGCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACTGGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTGTGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG]




>consensus_5032#1
TTTTTTAACCGATTTATCAACTAGTTCAACTTCAGGCTTGCATTTGCTACCCAGAAATAG
CGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTCGCA
AGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCATCT
ATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCCACT
GGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAATTG
TGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5032#0      ----CCGGCCGAACGTCAACAACAGTGAATTATGTAAAAAGTGCATTTGCTACCCAGAAA 56
consensus_5032#1      TTTTTTAACCGA--TTTATCAACTA-GTTCAACTTCAGGCTTGCATTTGCTACCCAGAAA 57
                              ****   * * ****   *    *  * *    *******************

consensus_5032#0      TAGCGCTCGCATTGCAATCGATGTAGAATTTAGGCATTGTCTTAGTTTAAATGATTATTC 116
consensus_5032#1      TAGCGCTCGCGTTGCAATCGATGTAGAATTTAGGCATTGGCTTAGTTTAAATGATTATTC 117
                      ********** **************************** ********************

consensus_5032#0      GCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAGCGTTGGGCA 176
consensus_5032#1      GCAAGAGCAAAACGCTGAAAGAGCTTTTGGATCGATGGCCCGGTAAGCGAACGCTGGGCA 177
                      ************************************************** ** ******

consensus_5032#0      TCTATCGATTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCC 236
consensus_5032#1      TCTATCGGTTCCTGCCCATCTTCTTCGGACTCGGAGCGGCGTTGGAGTTTTCCATGATCC 237
                      ******* ****************************************************

consensus_5032#0      ACTGGCGTGTAGGGGAGACCAACTTTTATAATACGTTCAAAAAGCGACAGGCAAAGGAAA 296
consensus_5032#1      ACTGGCGTGTATGGGAGACCAACTTTTATAATACGTTCAAAAAGCGGCAGGCAAAGGAAA 297
                      *********** ********************************** *************

consensus_5032#0      TTGTGGAGGAAAAGTTGCGCCTCCATCAGCTGGAACCAATTCCGCGCGGCTAAGCCACTG 356
consensus_5032#1      TTGTGGAGGAAAAGTTTCCCCTCCATCAGCTGGAACCAATTCCGCGCG------------ 345
                      **************** * *****************************            

consensus_5032#0      TGCACCACATTGTGAAATTAAGGAGGAAAACAGTCGAAAAAACGGAAAACAATGCCGGCC 416
consensus_5032#1      ------------------------------------------------------------
                                                                                  

consensus_5032#0      GGTGTTCCTATGCGACAGTATCTGTCCTTCATGGCAGCCGCCCTGCTGTCCATGTTTGTC 476
consensus_5032#1      ------------------------------------------------------------
                                                                                  

consensus_5032#0      GGATCGCAAGTAGTGCACACGTACTATCACCCGCTACGAGACCTTAACTACTACGTCGAG 536
consensus_5032#1      ------------------------------------------------------------
                                                                                  

consensus_5032#0      CGAGAAATCAAGATGCAACGGTTACGCGAAGTTGCGCAGCCACCGGAAAACTCAGCTCCT 596
consensus_5032#1      ------------------------------------------------------------
                                                                                  

consensus_5032#0      GCTCAGGGAAGCTAAATAAAAGCCTGAAGTTGAACTAGTTGATAAATCGGTTAAAAAAAA 656
consensus_5032#1      ------------------------------------------------------------