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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence
[CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCG-GGCTGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAG-AATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTTACAGACGG]
[+] EMBL AL696745 [CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCG GGCTGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAG AATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTT ]
[+] EMBL AL931579 [ agatCGCCGAGGCTTTTTCC AGCAACGGTGCAGAATGGTGGAAAA TCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTTACAGACGG]
consensusID : consensus_5049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence
[CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTCTTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTACATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTCATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGG-CCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCG-CAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGA-CAACGGTGCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG]
[+] EMBL AL696785 [CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTCTTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTACATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTCATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGG CCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCG CAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGA CAACGGTGCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAG ]
[+] EMBL AGA284763 [ TCGGTAGCTAACAAACCTTCGCAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACCAACGGTGCA GAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5049#0 ------------------------------------------------------------
consensus_5049#1 CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTC 60
consensus_5049#0 ------------------------------------------------------------
consensus_5049#1 TTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTA 120
consensus_5049#0 ------------------------------------------------------------
consensus_5049#1 CATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTC 180
consensus_5049#0 ------------------------------------------CGAGCAGATCGCCAGAGG 18
consensus_5049#1 ATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCA 240
*** * ** ** *
consensus_5049#0 TGNANAC-GCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC 77
consensus_5049#1 AGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC 300
* ** ****************************************************
consensus_5049#0 TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGC 137
consensus_5049#1 TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGC-AGTATGGTTCGATCGTGCGC 359
*************************************** ********************
consensus_5049#0 GAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACC 197
consensus_5049#1 GAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACC 419
************************************************************
consensus_5049#0 GTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAA 257
consensus_5049#1 GTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAA 479
************************************************************
consensus_5049#0 AAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACCAACGGT 317
consensus_5049#1 AAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGAC-AACGGT 538
***************************************************** ******
consensus_5049#0 GCA-GAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGT 376
consensus_5049#1 GCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGT 598
*** ********************************************************
consensus_5049#0 GCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGC 436
consensus_5049#1 GCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG-------------------- 638
****************************************
consensus_5049#0 GCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCT 496
consensus_5049#1 ------------------------------------------------------------
consensus_5049#0 GAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGA 556
consensus_5049#1 ------------------------------------------------------------
consensus_5049#0 ACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTC 616
consensus_5049#1 ------------------------------------------------------------
consensus_5049#0 CTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTT 676
consensus_5049#1 ------------------------------------------------------------
consensus_5049#0 ACAGACGG 684
consensus_5049#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||