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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence
[AATATATATACAATTAAATATACATATATCATCTGTAAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGTAAGATAGAGAACCATGCTGTCACGAATGTATAACGGAAAGTCATCCATGTGGGCCATGTGGCGTCATTAGCGAAAGTTGCGTGATTGGGGATAGGATTGAAATGATGGAATGATGGTTTTTTTGCATTGTAAGTTTACTTTCTACATACCCAGTTCTTTTAGTCAATACTGGCATAATTTCTTTGTGTTGTAAGTAGTAGTACCATCAGCCTAGCAGGCAGACAGAAGAGTACGAATTTACTTTCCCATTAGCTAAGCTTATCTAAAAATCAAGTGTGGCACATTCAGGTGAGCAGAATGTGCAGTTCGAAGCAAAAAATAACCATTGTAACCGCGTGTTAGCAGTGGCACCGCCGGAAGTGGAAGGACATTAAAAAATGGAATTAAAAAAACCACAACATCTCACAATTGGCTGTTTTAATTGGTGTTTTTGTGTTTCAAAATTTATAACAACGTTCCAGTGCAATTGGTGCCGAATTCACGTTTGGGTGCTTTTTTGTCGTTAAAAAAAATACACACACACAACAAGACTGATTAGAGCGGTGACAGCAGCGTTTGGAAAATGGTTTGCCAGCTTGGGCTGGCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAGATTCTCTTTTCCTTTTTTAACGCATCAGTATGTTTGGAGTGGCTTCTTATTCCATTTAGTCAAATGTTGCGTTTCATGATTTAAATCCGTAGAAGAAAACGAAGCAAAATCGAATCAATGGTATATCTATTAACCGTACCGAAAGGTGTGCGATATGATGGAAATGGTTCAATTCCTGTGCAAGTTAATATGGCAACGAGTTTCAGAAGTAAAATACATTATTGCTTCCACTACTATTACTAACTACTACTACTACTGCTGCTACCGATGAGCTGTAGGAAATGGGTTTGATGCAGATTGCAGAACACATTGCAACGGTATACTAATTAACTTACATCAAACCCTGGAGTGCGCAGTATTTCGTTGTAAAAAAAAGATATATGAAACTGGGTAAGAAAACGCTAACCGACCGGAGAAACAAACCAAATCACTTGAAATAAACCACCGCTTT]
[+] EMBL BX609268 [AATATATATACAATTAAATATACATATATCATCTGTAAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGTAAGATAGAGAACCATGCTGTCACGAATGTATAACGGAAAGTCATCCATGTGGGCCATGTGGCGTCATTAGCGAAAGTTGCGTGATTGGGGATAGGATTGAAATGATGGAATGATGGTTTTTTTGCATTGTAAGTTTACTTTCTACATACCCAGTTCTTTTAGTCAATACTGGCATAATTTCTTTGTGTTGTAAGTAGTAGTACCATCAGCCTAGCAGGCAGACAGAAGAGTACGAATTTACTTTCCCATTAGCTAAGCTTATCTAAAAATCAAGTGTGGCACATTCAGGTGAGCAGAATGTGCAGTTCGAAGCAAAAAATAACCATTGTAACCGCGTGTTAGCAGTGGCACCGCCGGAAGTGGAAGGACATTAAAAAATGGAATTAAAAAAACCACAACATCTCACAATTGGCTGTTTTAATTGGTGTTTTTGTGTTTCAAAATTTATAACAACGTTCCAGTGCAATTGGTGCCGAATTCACGTTTGGGTGCTTTTTTGTCGTTAAAAAAAATACACACACACAACAAGACTGATTAGAGCGGTGACAGCAGCGTTTGGAAAATGGTTTGCCAGCTTGGGCTGGCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAGATTCTCTTTTCCTTTTTTAACGCATCAGTATGTTTGGAGTGG ]
[+] EMBL BX612966 [ AACAAGACTGATTAGAGAGGTGACAGCAGCGTTTGTAAAATGGTTTGCCAGCTTGGGCTGGCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAGATTCTCTTTTCCTTTTTTAACGCATCAGTATGTTTGGAGTGGCTTCTTATTCCATTTAGTCAAATGTTGCGTTTCATGATTTAAATCCGTAGAAGAAAACGAAGCAAAATCGAATCAATGGTATATCTATTAACCGTACCGAAAGGTGTGCGATATGATGGAAATGGTTCAATTCCTGTGCAAGTTAATATGGCAACGAGTTTCAGAAGTAAAATACATTATTGCTTCCACTACTATTACTAACTACTACTACTACTGCTGCTACCGATGAGCTGTAGGAAATGGGTTTGATGCAGATTGCAGAACACATTGCAACGGTATACTAATTAACTTACATCAAACCCTGGAGTGCGCAGTATTTCGTTGTAAAAAAAAGATATATGAAACTGGGTAAGAAAACGCTAACCGACCGGAGAAACAAACCAAATCACTTGAAATAAACCACCGCTTT]
consensusID : consensus_5069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1016 fasta sequence
[CCCGAGGTTATTTACGGGAAGCGACGAAGCGGACGAAAACCGTCGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTTTGTAAGCGCAAATTTGCCAGTCAAATTTAACCGCCCTTTACACACACACACACACACACTCTCGCGTGTGCGCATATGGCGACAAGAAAGCTCTTTACGCAAGCGGTTGTGGTGTGCCATTTGTACAGCCTCAGCAATTGGCCAACAGTTCCAAATGGCTGATTAGGATGGTACCATTGCGCATCATCAGGACACGCAACAAACGCTCTACTATACCGGTATGATTACTTGCGCTATGATTAGTTATCTTTGCGCAACACCTCGGGCAAAAGCAAAATCGTCTAATAAGCCTGCAGCCTTTCTTTGCATTTTCAATTCATGCCTTAACACATGCACANCACACACAGGCAAGCAAGCANACACAATTATGCCAGGCCAAGTGGGCAATGTTGCGCGTCAGCGCTTTTTGGAACACGGTTCTTCAGACGATTAAGACAGTCACATTATCAGCGAGCTNTAGCTTCCCCCAGGGGCAGCGGGCAAAATCCATTGGGCCGAAGTGCNGGATCACCATTATGCCAGCACATGGTCCTGTACTGTAAACAGAGAACCAGCGTTATTGTATACATAATANTATAGACCCAAATCATTATATTACACAGTTNAANNGTACTACATATTATCATCTGGTACAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGCTAAGATAGAGCAACCATGCTGTCACCGAAANCGTCTANACGGNNNAGTCATCCATGTGGAGCCCCATTGTTNGCCCNGCTCACTTTANAGCCGAAACACGTTCGGCCAGCTTGANTCTCGGGGCGCACTTAACGCGGACTCTCGGACANCCTTGCACTGCGGCACACTCGCATCGGGGTAACNCTCATCGGCATCTGCTNNACACGTTTTCTAACTTNTTTCCTCAACGCAATTAACCCCCAAGGTANCNTTC]
[+] EMBL AL930769 [CCCGAGGTTATTTACGGGAAGCGACGAAGCGGACGAAAACCGTCGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTTTGTAAGCGCAAATTTGCCAGTCAAATTTAACCGCCCTTTACACACACACACACACACACTCTCGCGTGTGCGCATATGGCGACAAGAAAGCTCTTTACGCAAGCGGTTGTGGTGTGCCATTTGTACAGCCTCAGCAATTGGCCAACAGTTCCAAATGGCTGATTAGGATGGTACCATTGCGCATCATCAGGACACGCAACAAACGCTCTACTATACCGGTATGATTACTTGCGCTATGATTAGTTATCTTTGCGCAACACCTCGGGCAAAAGCAAAATCGTCTAATAAGCCTGCAGCCTTTCTTTGCATTTTCAATTCATGCCTTAACACATGCACANCACACACAGGCAAGCAAGCANACACAATTATGCCAGGCCAAGTGGGCAATGTTGCGCGTCAGCGCTTTTTGGAACACGGTTCTTCAGACGATTAAGACAGTCACATTATCAGCGAGCTNTAGCTTCCCCCAGGGGCAGCGGGCAAAATCCATTGGGCCGAAGTGCNGGATCACCATTATGCCAGCACATGGTCCTGTACTGTAAACAGAGAACCAGCGTTATTGTATACATAATANTATAGACCCAAATCATTATATTACACAGTTNAANNGTACTACATATTATCATCTGGTACAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGCTAAGATAGAGCAACCATGCTGTCACCGAAANCGTCTANACGGNNNAGTCATCCATGTGGAGCCCCATTGTTNGCCCNGCTCACTTTANAGCCGAAACACGTTCGGCCAGCTTGANTCTCGGGGCGCACTTAACGCGGACTCTCGGACANCCTTGCACTGCGGCACACTCGCATCGGGGTAACNCTCATCGGCATCTGCTNNACACGTTTTCTAACTTNTTTCCTCAACGCAATTAACCCCCAAGGTANCNTTC]
consensusID : consensus_5069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence
[CGAGGTTAAATCTCAATAATATACTCAAACTAAATTCAATCGATTTACGGGAAGCGACGAAGCGGACGAAAACCGTACGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTATATGTAAGCGCAAATATTTAGCCAGTACAAATTTAACCGCCCTATTACACACACACACACACACACTACTCGCGTAGTNGCGCATAATGGCTGACCAAAGAAAGCTCTATATACGCAAGCGTGTTAGTAGGTAGTAGCCATATTTGTAACAAGCCTACCAGGCCAATATTGGCCCAACAGTATACACAAACTGGCTTGCNTTNANCGATNGGTAACCCATATTGCGCNTCATCAAGGTGGACAACNGCCAACCTAANACCCGGCCTACCTAACCTACTACCCCGGCTANATAGCACTATCACCCTCTTGGCNGCCCTACTGGACTANAAGGTCATAATACCTCTCTCGACNGCCANAAGCCCTCACTCCCTCGCGCCCACNAGCANGCCCACCAGCACNATNCNGCTCCTTAAACTACANACGGCCTTGGCGAGGGCCTATATCGCNCANCAAGGCCTATCNTCCAGCGCTTCTTNCTTTGGGCCCTTGACACNCCAATTTGGTACACCACCCACAAACTTGGGGANCANGTACACAACTNCNAGCAGCCATTCTCCNTTTGCCCACGGGCCAACAGAGGCTAGGGGGGGCACNACTATGGTCNCCNGNGGANNCTAACACACCCGGCCTGAGTCCACCGGGANAAGACCCGCGGTCTCAGTATCACACGCCACANNTNAACCNTCCACACGTCNACACNCNCAATTTCAACGACGGNCAGCTCAAACCTATTGTCCGCCTCCCGGGCGAGCAGGGNGNGCCAAAC]
[+] EMBL AL692102 [CGAGGTTAAATCTCAATAATATACTCAAACTAAATTCAATCGATTTACGGGAAGCGACGAAGCGGACGAAAACCGTACGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTATATGTAAGCGCAAATATTTAGCCAGTACAAATTTAACCGCCCTATTACACACACACACACACACACTACTCGCGTAGTNGCGCATAATGGCTGACCAAAGAAAGCTCTATATACGCAAGCGTGTTAGTAGGTAGTAGCCATATTTGTAACAAGCCTACCAGGCCAATATTGGCCCAACAGTATACACAAACTGGCTTGCNTTNANCGATNGGTAACCCATATTGCGCNTCATCAAGGTGGACAACNGCCAACCTAANACCCGGCCTACCTAACCTACTACCCCGGCTANATAGCACTATCACCCTCTTGGCNGCCCTACTGGACTANAAGGTCATAATACCTCTCTCGACNGCCANAAGCCCTCACTCCCTCGCGCCCACNAGCANGCCCACCAGCACNATNCNGCTCCTTAAACTACANACGGCCTTGGCGAGGGCCTATATCGCNCANCAAGGCCTATCNTCCAGCGCTTCTTNCTTTGGGCCCTTGACACNCCAATTTGGTACACCACCCACAAACTTGGGGANCANGTACACAACTNCNAGCAGCCATTCTCCNTTTGCCCACGGGCCAACAGAGGCTAGGGGGGGCACNACTATGGTCNCCNGNGGANNCTAACACACCCGGCCTGAGTCCACCGGGANAAGACCCGCGGTCTCAGTATCACACGCCACANNTNAACCNTCCACACGTCNACACNCNCAATTTCAACGACGGNCAGCTCAAACCTATTGTCCGCCTCCCGGGCGAGCAGGGNGNGCCAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5069#1 --------------------------------------------------------CCCG 4
consensus_5069#2 -----------------------CGAGGTTAAATCTCAATAATATACTCAAACTAAATTC 37
consensus_5069#0 AATATATATACAATTAAATATACATATATCATCTGTAAGCATCACAAGGCAGGGCGCCAG 60
consensus_5069#1 AGGTTATTTACGGGAAGCGACGAAGCGGACGAAAAC-CGT-CGCGTAGTAAAAATTTA-C 61
consensus_5069#2 AATCGATTTACGGGAAGCGACGAAGCGGACGAAAAC-CGTACGCGTAGTAAAAATTTA-C 95
consensus_5069#0 GAACAGTGCGCGTGTAAGATAGAGAACCATGCTGTCACGAATGTATAACGGAAAGTCATC 120
* ** * * ** * * * ** * ** *** * * *
consensus_5069#1 AACACAAACCA-ATACCCAGAACCGTAACTTTT--GTAAGCGCAAATTT---GCCAGT-C 114
consensus_5069#2 AACACAAACCA-ATACCCAGAACCGTAACTTATATGTAAGCGCAAATATTTAGCCAGTAC 154
consensus_5069#0 CATGTGGGCCATGTGGCGTCATTAGCGAAAGTTGCGTGATTGGGGATAGGATTGAAATGA 180
* *** * * * * * * ** * * ** * *
consensus_5069#1 AAATTTAACCGCCCT-TTACAC-----ACACAC-----ACACACACACT-CTCGC-GTG- 160
consensus_5069#2 AAATTTAACCGCCCTATTACAC-----ACACAC-----ACACACACACTACTCGC-GTAG 203
consensus_5069#0 TGGAATGATGGTTTTTTTGCATTGTAAGTTTACTTTCTACATACCCAGTTCTTTTAGTCA 240
* * * * ** ** ** *** ** ** * ** **
consensus_5069#1 -TGC--GCATA-TGGC-----GAC--AAGAA--AGCTCTTTA--C---GCAAGCG-GTTG 201
consensus_5069#2 TNGC--GCATAATGGCT----GACCAAAGAA--AGCTCTATATAC---GCAAGCGTGTTA 252
consensus_5069#0 ATACTGGCATAATTTCTTTGTGTTGTAAGTAGTAGTACCATCAGCCTAGCAGGCAGACAG 300
* ***** * * * *** * ** * * * *** **
consensus_5069#1 TGGTGT----GCCATTTGTACAGCCTCAGCAATTGGCCAACAGTT-CCAAATGGCTGATT 256
consensus_5069#2 GTAGGTAGTAGCCATATTTGTAACAAGCCTACCAGGCCAATATTGGCCCAACAGTATACA 312
consensus_5069#0 AAGAGTACGAATTTACTTTCCCATTAGCTAAGCTTATCTAAAAATCAAGTGTGGCACATT 360
** * * * * * * * *
consensus_5069#1 AGGATGGTACCATTGCGCATCATCAGGACACGCAACAAACGCTCTACTATACCGGTATGA 316
consensus_5069#2 CAAACTG-GCTTGCNTTNANCGATNGGTAACCCATATTGCGCNTCATCAAGGTGG-ACAA 370
consensus_5069#0 CAGGTGAGCAGAATGTGCAGT-TCGAAGCAAAAAATAACCATTGTAACCGCGTGTTAGCA 419
* * * * * * * *
consensus_5069#1 TTACTTGCGCTATGATTAGTT--ATCTTTGCGCAACACCTCGGGCAAA-AGCAAAATCGT 373
consensus_5069#2 CNGCCAACCTAANACCCGGCC--TACCTAACCTACTACCCCGGCTANATAGCACTATCAC 428
consensus_5069#0 GTGGCACCGCCGGAAGTGGAAGGACATTAAAAAATGGAATTAAAAAAACCACAACATCTC 479
* * * * * * ** ***
consensus_5069#1 CTAATAAGCCTGCAGCCTT----TCTTTGCATTTTCAA-TTCATGCCTTAACACATGCAC 428
consensus_5069#2 CCTCTTGGCN----GCCCT----AC--TGGACTANAAG-GTCATA---------ATACCT 468
consensus_5069#0 ACAATTGGCTGTTTTAATTGGTGTTTTTGTGTTTCAAAATTTATAACAACGTTCCAGTGC 539
* ** * ** * * * **
consensus_5069#1 ANCACACACAGGCAAGCAAGCANACACAATTATGCCAGGCCAAG-TGGGCAATGTTGCGC 487
consensus_5069#2 CTCTCG-ACNGCCA--NAAGCCCTCAC---TCCCTCGCGCCCA--CNAGCAN----GCCC 516
consensus_5069#0 AATTGGTGCCGA-ATTCACGTTTGGGTGCTTTTTTGTCGTTAAAAAAAATACACACACAC 598
* * * * * * * * * * *
consensus_5069#1 GTCAGCGCTTTTTGGA---------ACACGGTTCTTCAGACGATTAAGACAGTCACATTA 538
consensus_5069#2 ACCAGCACN----------------ATNCNGCTCCTTAAACTAC--ANACGGCC---TTG 555
consensus_5069#0 AACAAGACTGATTAGAGCGGTGACAGCAGCGTTTGGAAAATGGTTTGCCAGCTTGGGCTG 658
** * * * * * *
consensus_5069#1 TCAGCGAGCTNT--AGCTTCCCCCAGGGGC-AGCGG--GCAAAATCCATTGGGCCGAAGT 593
consensus_5069#2 GCGAGGGCCTAT--ATCGCNCANCAAGGCCTATCNT--CCAGCGCTTCTTNCTTTGGGCC 611
consensus_5069#0 GCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAG 718
* * * * * * * * *
consensus_5069#1 GCNGGATCACCATTATGCCAGCACATGGTCCTGTACTG--TAAACAGAGAACCAGCGTTA 651
consensus_5069#2 CTTGACACNCCAATTTGGTACACCACCCACAAACTTGG--GGANCANGTACACAAC-TNC 668
consensus_5069#0 ATTCTCTTTTCCTTTT-TTAACGCATCAGTATGTTTGGAGTGGCTTCTTATTCCATTTAG 777
* * * * ** * * * *
consensus_5069#1 TTGTATACA-----TAATANTATAGA-CC-CAAATCATTATATTACACAGTTNAAN-NGT 703
consensus_5069#2 NAGCAGCCA-----TTCTCCNTTTGC-CCACGGGCCA-------ACAGAGGCTAGG-GGG 714
consensus_5069#0 TCAAATGTTGCGTTTCATGATTTAAATCCGTAGAAGAAAACGAAGCAAAATCGAATCAAT 837
* * * * ** * ** * *
consensus_5069#1 ACTACAT--ATTATCATCTGGTACAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGT 761
consensus_5069#2 GGCACN---ACTATGGTCNCCNGNGG-ANNCTAACACACCCGGCCTGAGTCCAC---CGG 767
consensus_5069#0 GGTATATCTATTAACCGTACCGAAAGGTGTGCGATATGATGGAAATGGTTCAATTCCTGT 897
* * ** * * * * *
consensus_5069#1 GCTAA--GATAGAGCAACCATGCTGTCACCGAAANCGTCTANACGGNNNAGTCATCCATG 819
consensus_5069#2 GANAA--GACCC-GCGGTCTCAGTATCACACGCCACANNTNAACCNTCCACACGTCNACA 824
consensus_5069#0 GCAAGTTAATATGGCAACGAGTTTCAGAAGTAAAATACATTATTGCTTCCACTACTATTA 957
* * * ** * * *
consensus_5069#1 TGGAGCCCCATTGTTNGCCCNGCTCACTTTANAGCCGAAACACGTTCGGCCAGCTTGANT 879
consensus_5069#2 CN----CNCAATTTCAACGACGGNCAGCTCAAACCT-----ATTGTCCGCCTCCCGGGCG 875
consensus_5069#0 CTAACTACTACTACTACTGCTGCT-ACCGATGAGCTGTAGGAAATGGGTTTGATGCAGAT 1016
* * * * * * *
consensus_5069#1 CTCGGGGCGCACT-TAACG---------CGGACTCTCGGACANCCTTGCACTGCGGCACA 929
consensus_5069#2 AGCAGGGNGNGCC-AAAC------------------------------------------ 892
consensus_5069#0 TGCAGAACACATTGCAACGGTATACTAATTAACTTACATCAAACCCTGGAGTGCGCAGTA 1076
* * ***
consensus_5069#1 CTCGCATCGGGGTAACNCTCATCGGCATCTGCTNNACACGTTTTCTAACTTNTTTCCTCA 989
consensus_5069#2 ------------------------------------------------------------
consensus_5069#0 TTTCGTTGTAAAAAAAAGATATATGAAACTGGGTAAGAAAACG-CTAACCGACCGGAGAA 1135
consensus_5069#1 ACGCAATTAACC-CCCAAGGTANCNTTC------ 1016
consensus_5069#2 ----------------------------------
consensus_5069#0 ACAAACCAAATCACTTGAAATAAACCACCGCTTT 1169
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||