|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1008 fasta sequence
[GGCAAGAATTCGGCACGATGGCGCACACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCTGTTCATTTACTGCGTGTGGAAGTGGCCCCGCCGCGGCCTGATGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGTTCTACGTCACCTACAGTATGCGGTTGGCCAACTACGTCTACTTCGGCACGTCCGTGAAGCAACTGTTTGAAACTGCCGACTACATGTACATACTGCCGTACTACCGTGTCACCGTCTACCTCATGGGCGTTATGCTAGGCTACGTTTGCTCCAAGTACAAAACGATGCAACTCACCGAGAAACAAATGAAAATCGGATGGTACATCAGCACACTGTCCATTGCCGTGGCGTTCTTCGGACCGGCCCCGATGGGCTCGATGCACTACGTGTACAATCCGCTGCACGCCGCGAGCTAC--G-CAGCGTTCTCGCCGATAGCG-TGGTGTCTCTCTTTTGCCTGGACCGTCTTCACCGGCCACCTGGGCTATCGAAACTGGGTGATAGACCTTTNGCCGTGGCGTCGGGTTCCGCATCACCACCAGAATATCGTACGCTATCTACCTGACGCAGTTTCCCATCTTCTTCTACAACGTTGGCAGAACGCGGTCGCCACAGTATTTCGAGTTCTGGCCAGCCGTTATCTTCAACACTAACGAGTACCTGGTCGTGTTTCTCTCATCCTTCCTGCTGACGGTCCTGTTCGAGACACCGTTATCAACGTGAAGAAGCTACTGTTCAGTAACAACCGACACGCGAAGCAGGCGGCAGGCGGCGGCGATGGCAGCACAAGCGCCACTGAACCATTGGCAGCGCATCCTGCAAAACTTGACGCAGCACCGGGTAGTAGTGCTGGAGGAGTTTGTCCCGGCATGATGGACGAGAATGAAAATAGTCGATCTAATGGGTATTTTGAGTGTGACAAGAGTAAATTAAATTGTTAGGCCAAAAAAAAAAAAAATTCAACACNAAGACAGCATGTTGC]
[+] EMBL BX468185 [GGCAAGAATTCGGCACGATGGCGCACACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCTGTTCATTTACTGCGTGTGGAAGTGGCCCCGCCGCGGCCTGATGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGTTCTACGTCACCTACAGTATGCGGTTGGCCAACTACGTCTACTTCGGCACGTCCGTGAAGCAACTGTTTGAAACTGCCGACTACATGTACATACTGCCGTACTACCGTGTCACCGTCTACCTCATGGGCGTTATGCTAGGCTACGTTTGCTCCAAGTACAAAACGATGCAACTCACCGAGAAACAAATGAAAATCGGATGGTACATCAGCACACTGTCCATTGCCGTGGCGTTCTTCGGACCGGCCCCGATGGGCTCGATGCACTACGTGTACAATCCGCTGCACGCCGCGAGCTAC G CAGCGTTCTCGCCGATAGCG TGGTGTCTCTCTTTTGCCTGGACCGTCTTCACCGGCCACCTGGGCTATCGAAACTGGGTGATAGACCTTTNGC ]
[-] EMBL BX466763 [ CGCGAGCTACCGGCCAGCGTTCTCGCCGATAGCGCTGGTGTCTCTTTTTTGCCTGGACCGTCTTCACCGCCCACCTGGGCTATCGAAACTGGGTGATAGACTTTTTCTCGTGGCGTCGGGTTCCGCATCACCACCAGAATATCGTACGCTATCTACCTGACGCAGTTTCCCATCTTCTTCTACAACGTTGGCAGAACGCGGTCGCCACAGTATTTCGAGTTCTGGCCAGCCGTTATCTTCAACACTAACGAGTACCTGGTCGTGTTTCTCTCATCCTTCCTGCTGACGGTCCTGTTCGAGACACCGTTATCAACGTGAAGAAGCTACTGTTCAGTAACAACCGACACGCGAAGCAGGCGGCAGGCGGCGGCGATGGCAGCACAAGCGCCACTGAACCATTGGCAGCGCATCCTGCAAAACTTGACGCAGCACCGGGTAGTAGTGCTGGAGGAGTTTGTCCCGGCATGATGGACGAGAATGAAAATAGTCGATCTAATGGGTATTTTGAGTGTGACAAGAGTAAATTAAATTGTTAGGCCAAAAAAAAAAAAAATTCAACACNAAGACAGCATGTTGC]
consensusID : consensus_5074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 902 fasta sequence
[GCAAGAATCGGCACGAGGAGTGCTTAGCATTCAGCAAACCCTCGGCAGCATTGGCGATTCGTCCGCCCAGGCAGCACCGCTCCGGGGGCGGTACTGCATGGCCGAGGTGCAGCCGACGATCAAGCCCAACACGCGCGTCCTGAAGCACCTGTTCGAGCTGGTCCAGGCGCACGGCATGCTGAAGAGCAACTTGGATGATCCCGGTCACCGCGTGCCTCGGTTTTCCACCGTCCACTGGGCGCTGTGCGTACCGGCCGGCTGTACCGCGGCTGACGTTCAACAGTCGCTCGGCGCCTTCCTGCACCACTACATAGCGGACACGGGCCTGCAGACGGAGGTAAAGGTGCATCCGGCACTGTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTTACATCAATCGGACGGAAATAGCCAAGGTGCTTTGCCAAACCGTGGACACGTGATTTGGCCGGGCGGCAGCCAATTTCAACCGGATCCGGTTCAATCAATGTTCACGGGGTTCCTGAACNNACGTTCTCCTTCATCGAGCGGGTGAGAAAAGGCAAGGGGTTCGGTGCACCCAGGAGNTTATTGGGCNGTTGCTTCGGAATTGCCCACCGGTCGGTGGGCTCATTTTATCTGACCCTTTTGCTGCGTTTTGGCA]
[+] EMBL BX467755 [GCAAGAATCGGCACGAGGAGTGCTTAGCATTCAGCAAACCCTCGGCAGCATTGGCGATTCGTCCGCCCAGGCAGCACCGCTCCGGGGGCGGTACTGCATGGCCGAGGTGCAGCCGACGATCAAGCCCAACACGCGCGTCCTGAAGCACCTGTTCGAGCTGGTCCAGGCGCACGGCATGCTGAAGAGCAACTTGGATGATCCCGGTCACCGCGTGCCTCGGTTTTCCACCGTCCACTGGGCGCTGTGCGTACCGGCCGGCTGTACCGCGGCTGACGTTCAACAGTCGCTCGGCGCCTTCCTGCACCACTACATAGCGGACACGGGCCTGCAGACGGAGGTAAAGGTGCATCCGGCACTGTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTTACATCAATCGGACGGAAATAGCCAAGGTGCTTTGCCAAACCGTGGACACGTGATTTGGCCGGGCGGCAGCCAATTTCAACCGGATCCGGTTCAATCAATGTTCACGGGGTTCCTGAACNNACGTTCTCCTTCATCGAGCGGGTGAGAAAAGGCAAGGGGTTCGGTGCACCCAGGAGNTTATTGGGCNGTTGCTTCGGAATTGCCCACCGGTCGGTGGGCTCATTTTATCTGACCCTTTTGCTGCGTTTTGGCA]
consensusID : consensus_5074#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[GTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTACATCAATCGGACGGAAATGAGCGAGGTGCTTGGCCAACCGTGGACCGTGATCGGCCGGGCGGCAGCCATCTTCACCGATCCGTTCATCATGTTCAGCGGCTTCCTGACCACGTTCTCCTTCATCGAGCGGCTGCAGAAGGGCCAGCGGGTTCGGCTGCACCAGGAGTACATTGGCCGGTTGCTGCGGATTGCCCCACCGCTCGGTGCGCTCATTCTGATCTGCACCTTTGTGCTGCCGTTTCTCGGCACCGGCCCGCTGTGGAATCTGGTGGTGACGAACCACGGCGACATCTGCAAGCAGTACTGGTGGCGCAACATGCTGTTCATACACAACTACTTCGGCTTCAAGAACATGTGCCTCACGCACACGCACCACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCCTGTTCATTTACTGCGTGTGGAAATGGCCCCGCCGCGGCCTGATGGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGNTCTACGTCACCTACAG]
[+] EMBL BX628048 [GTGCCAGACCAAGCACTACATCTGGCACGAGTACTTCACCGATCGGACGCTGCTGGTGTGGTGCGCGTTTGCGCTGTACGCGCTGCTGGTGCTGTCCTCCACCCTGTACGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCAAAAACACCCGTTCGATACTGAGCTTCAAGGAGGAGCGGAACGATATCGCTTGCCTGCACGGTATACGCTTCCTGAATGCGATGCTGCTGCTGATTGCGCACAAATCCATGGCCCTGTTCTTCAACCCGTACATCAATCGGACGGAAATGAGCGAGGTGCTTGGCCAACCGTGGACCGTGATCGGCCGGGCGGCAGCCATCTTCACCGATCCGTTCATCATGTTCAGCGGCTTCCTGACCACGTTCTCCTTCATCGAGCGGCTGCAGAAGGGCCAGCGGGTTCGGCTGCACCAGGAGTACATTGGCCGGTTGCTGCGGATTGCCCCACCGCTCGGTGCGCTCATTCTGATCTGCACCTTTGTGCTGCCGTTTCTCGGCACCGGCCCGCTGTGGAATCTGGTGGTGACGAACCACGGCGACATCTGCAAGCAGTACTGGTGGCGCAACATGCTGTTCATACACAACTACTTCGGCTTCAAGAACATGTGCCTCACGCACACGCACCACGTCGGCATCGATACGGAGCTGTTCTTCGTGGCGCCCCCTGTTCATTTACTGCGTGTGGAAATGGCCCCGCCGCGGCCTGATGGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGNTCTACGTCACCTACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5074#1 GCAAGAATCGGCACGAGGAGTGCTTAGCATTCAGCAAACCCTCGGCAGCATTGGCGATTC 60
consensus_5074#2 ------------------------------------------------------------
consensus_5074#0 ------------------------------------------------------------
consensus_5074#1 GTCCGCCCAGGCAGCACCGCTCCGGGGGCGGTACTGCATGGCCGAGGTGCAGCCGACGAT 120
consensus_5074#2 ------------------------------------------------------------
consensus_5074#0 ------------------------------------------------------------
consensus_5074#1 CAAGCCCAACACGCGCGTCCTGAAGCACCTGTTCGAGCTGGTCCAGGCGCACGGCATGCT 180
consensus_5074#2 ------------------------------------------------------------
consensus_5074#0 ------------------------------------------------------------
consensus_5074#1 GAAGAGCAACTTGGATGATCCCGGTCACCGCGTGCCTCGGTTTTCCACCGTCCACTGGGC 240
consensus_5074#2 ------------------------------------------------------------
consensus_5074#0 -----------GGCAAGAATTCGGCACGATGGCGCACACGTCGGCATCGATACGGAGCTG 49
consensus_5074#1 GCTGTGCGTACCGGCCGGCTGTACCGCGGCTGACGTTCAACAGTCGCTCGGCGCCTTCCT 300
consensus_5074#2 ------------------------------------------------------------
consensus_5074#0 TTCTTCGTGGCGCCCCTGTTCATTTACTGCGTGTGGAAGTGGCCCCGCCGCGGCCTGATG 109
consensus_5074#1 GCACCACTACATAGCGGACACGGGCCTGCAGACGGAGGTAAAGGTGCATCCGGCACTGTG 360
consensus_5074#2 ---------------------------------------------------------GTG 3
consensus_5074#0 GGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGTTCTACGTCACCTACAGTATG 169
**
consensus_5074#1 CCA--GACCAAGCACTACATCT--GGCACGA--GTACTTCACCGATCGGACGCTGCTGGT 414
consensus_5074#2 CCA--GACCAAGCACTACATCT--GGCACGA--GTACTTCACCGATCGGACGCTGCTGGT 57
consensus_5074#0 CGGTTGGCCAACTACGTCTACTTCGGCACGTCCGTGAAGCAACTGTTTGAAACTGCCGAC 229
* * **** ** * ** ****** ** ** * * ** **** *
consensus_5074#1 GTGGTGCGCGTTTGCGCTGTAC-GCGCTGCTGGTGCTGTCCTC--------CACCCTGTA 465
consensus_5074#2 GTGGTGCGCGTTTGCGCTGTAC-GCGCTGCTGGTGCTGTCCTC--------CACCCTGTA 108
consensus_5074#0 TACATGTACATAC-TGCCGTACTACCGTGTCACCGTCTACCTCATGGGCGTTATGCTAGG 288
** * * ** **** * ** * **** * **
consensus_5074#1 CGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCA--AAAAC 523
consensus_5074#2 CGACCTGAAGTTCCAGACCAAAGCGGAATGGTTCACGGTGTTTTCACTCATCA--AAAAC 166
consensus_5074#0 CTACGTTTGCTCCAAGTACAAAACGATGCAACTCACCGAGAAACAAATGAAAATCGGATG 348
* ** * * * ** **** ** **** * * * * * * *
consensus_5074#1 ACCCGTTCG-ATACTGAGCTTCAAGGAGGAG-----CGGAACGATATCGCTTGCCTGCAC 577
consensus_5074#2 ACCCGTTCG-ATACTGAGCTTCAAGGAGGAG-----CGGAACGATATCGCTTGCCTGCAC 220
consensus_5074#0 GTACATCAGCACACTGTCCATTGCCGTGGCGTTCTTCGGACCGGCCCCGATGGGCTCGAT 408
* * * * **** * * * ** * **** ** ** * * ** *
consensus_5074#1 GGTATACGCTTCCTGAATGCGATGCTTGCTGCTGATTGCGCACAAATCCATGGCCCTGTT 637
consensus_5074#2 GGTATACGCTTCCTGAATGCGATGCT-GCTGCTGATTGCGCACAAATCCATGGCCCTGTT 279
consensus_5074#0 GCACTACGTGTAC--AATCCGCTGCACGCCGCGAGCTACGCA-GCGTTCTCGCCGATAGC 465
* **** * * *** ** *** ** ** * **** * * * * *
consensus_5074#1 CTTCAACCCGTTACATCAATCGGACGGAAATAGCCAAGGTGCTTTGCCAAACCGTGGACA 697
consensus_5074#2 CTTCAACCCGT-ACATCAATCGGACGGAAATGAGCGAGGTGCTTGGCCAA-CCGTGGAC- 336
consensus_5074#0 GTGGTGTCTCT-CTTTTGCCTGGACCGTCTTCACCG-GCCACCTGGGCTA-TCGAAACTG 522
* * * * **** * * * * * * * * * **
consensus_5074#1 CGTGATTTGGCCGGGCGGCA-GCCAATTTCAACCGGATCCGGTTCAATCAAT-GTTCACG 755
consensus_5074#2 CGTGATC-GGCCGGGCGGCA-GCCATCTTCACC--GATCCG-TTCATC--AT-GTTCAGC 388
consensus_5074#0 GGTGATA-GACCTTTNGCCGTGGCGTCGGGTTCCGCATCACCACCAGAATATCGTACGCT 581
***** * ** * * * * * *** ** ** ** *
consensus_5074#1 GGGTTCCTGAACNNACGTTCTCCTTCATCGAGCGGGTG-AGAAAAGGCAAGGGGTTCGGT 814
consensus_5074#2 GGCTTCCTGA--CCACGTTCTCCTTCATCGAGCGGCTGCAGAAGGGCCAGCGGGTTCGGC 446
consensus_5074#0 ATCTACCTGACGCAGTTTCCCATCTTCTTCTACAACGTTGGCAGAAC--GCGGTCGCCAC 639
* ***** * * * * * * * ** *
consensus_5074#1 GCACCCAGGAGNTTATTGGGCNGTTGCTTCGGAATTGCCCACCGGTCGGTGGGCTCATTT 874
consensus_5074#2 TGCACCAGGAGTACATTGGCCGGTTGCTGCGGATTGCCCCACCGCTCGGTGCGCTCATTC 506
consensus_5074#0 AGTATTTCGAGTTC--TGGCCAGCCGTTATCTTCAACACTAACGAGTA-CCTGGTCGTGT 696
*** *** * * * * * * ** * ** *
consensus_5074#1 T-ATCTG-ACCCTTTTGCTGCGTTTTGGCA------------------------------ 902
consensus_5074#2 TGATCTGCACCTTTGTGCTGCCGTTTCTCGGCACCGGCCCGCTGTGGAATCTGGTGGTGA 566
consensus_5074#0 TTCTCTCATCCTTCCTGCTGACGGTCCTGTTCGAGACACCGTTATC-AACGTGAAGAAGC 755
* *** ** * ***** *
consensus_5074#1 ------------------------------------------------------------
consensus_5074#2 CGAACCACGGCGACATCTG-CAAGCAGTACTGGTGGCGCAACATGCTGTTCATA-CACAA 624
consensus_5074#0 TACTGTTCAGTAACAACCGACACGCGAAGCAGGCGGCAGGCGGCGGCGATGGCAGCACAA 815
consensus_5074#1 ------------------------------------------------------------
consensus_5074#2 CTACTTCGGCTTCAAGAACATGTGCCTCACGCACACGCACCACGTCGGCATCGATACGGA 684
consensus_5074#0 GCGCCACTGAACCATTGGCA-GCGCATCCTGCAAA-ACTTGACG-CAGCACCGGGTAGTA 872
consensus_5074#1 ------------------------------------------------------------
consensus_5074#2 GCTGTTCTTCGTGGCGCCCCCTGTTCATTTACTGCGTGTGGAAATGGCCCCGCC-----G 739
consensus_5074#0 G-TGCTGGAGGAGTTTGTCCCGGCATGATGGACGAGAATGAAAATAGTCGATCTAATGGG 931
consensus_5074#1 ------------------------------------------------------------
consensus_5074#2 CGGCCTGATGGGGGCTGGCCGCGATCGCCCTACTGACCACCGTCCACCGGNTCTACGTCA 799
consensus_5074#0 TATTTTGAGTGTGACAAGAGTAAATTAAATTGTTAGGCCAAAAAAAAAAAAAATTCAACA 991
consensus_5074#1 -----------------
consensus_5074#2 CCTACAG---------- 806
consensus_5074#0 CNAAGACAGCATGTTGC 1008
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||