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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5092#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1675 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAGAAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCACTCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGTTGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTTTTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT]
[+] EMBL BM641224 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAGAAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCACTCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGTTGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTTTTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCACTCCATTCTCTTTCACACAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGT ]
[+] EMBL BM648667 [ ccgTTTAGTAATGGACAATACAGAATGTTTGATTAATGAGCTTAATATTCTGGAATATTCCCATTTAATAATTCCTCGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTTCGTTTCGGTTTGATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGAACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCTTCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCAAACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCAGCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAGCCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGCAGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCCAACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACAAGCTC ]
[+] EMBL BM590972 [ ccgCCCTTTTGGCCCTGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATTAACAAGTCAATTCGAACGCACTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGGACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGTCGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACCATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGCACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATAGCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGGACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATGAGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGAGACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAATGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCACCATTTGTT]
consensusID : consensus_5092#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT]
[+] EMBL AL692578 [GATCCCCCGAGTTAATTTAATTTAAAGTCACATGATCTGTTACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAATATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACACAAAAAAGAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATACGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCTCGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCAATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGCACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGTTTCCTTCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACACAAGACTTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5092#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATTTGTTGTCTCGAAATAGACTAAGGAG 60
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 AAAGACGGAAAAGGAAATCCTTTGCAAAATGGGAAATCATTTCATAGCAATCGGCTTCAC 120
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 TCAGCTGGTGATACATGGGAGTTTTATCTGAGAAACAGAAAGCTGAAACTCTAGTGTTGT 180
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 TGACATTGGCAAGGATAACAAATTGTGAAGACTTTAAATTTAAAGTCAAATGATTCCTTT 240
consensus_5092#1 ------------------GATCCCCCGAGTTAATTTAATTTAAAGTCACATGAT-CTGTT 41
* ** ** ************ ***** * **
consensus_5092#0 TTTGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT 300
consensus_5092#1 ACGGACACTGAATAGAACCATTTTTCTAAACATTCAGTCAATTAATCATTTTATCACAAT 101
*********************************************************
consensus_5092#0 ATTGGGCTCGGGGAAAAGGATATCCTTGCCATTCA--------CTCCATTCTCTTTCACA 352
consensus_5092#1 ATTGGGCTCGGGAGAAAGGATATCCTTGCCATTCATTTTATTACTCCATTCTCTTTCACA 161
************ ********************* *****************
consensus_5092#0 CAAAAAAAGAGTATTTAAGCTCTACGTGCATTATCTATCAACCTTTAGTAATGGACAATA 412
consensus_5092#1 CAAAAAA-GAGTAATTAAGCTCTACGTGCTTTATCTATCAACCTTTGGTAATGGACAATA 220
******* ***** *************** **************** *************
consensus_5092#0 CAGAATGTTTGATTAATGAGCTTAATATTC----TGGAATATTCCCATTTAATAATTCCT 468
consensus_5092#1 CGGAATGTTTGATTAATGAGCTTTATATTCATTCTGAAATTTTCCCATTTAATAACTCCT 280
* ********************* ****** ** *** ************** ****
consensus_5092#0 CGTGTTCCATATTACTCGAAGCAAGTTTAGTTAGCGAGAAACAGTTTT-CGTTTCGGTTT 527
consensus_5092#1 CGTGTTCCATTTTCCTCGGAGCAAGTTTAATTTACGAGAAACAGTTNTACATTTCA---- 336
********** ** **** ********** ** ************ * * ****
consensus_5092#0 GATTCATTCCAATTTGTTTGCCAACCTACACTGGATCGAAAGGAACAATTAGGCACTTGA 587
consensus_5092#1 -----ATTTCAATTTGTTTGCTAACCTACACTGAATCAAAAGGAACAATTACGCACTTGC 391
*** ************ *********** *** ************* *******
consensus_5092#0 ACAAATGGAAACATTCATTTGTTTCCTAGAAATCGGTTCGGAATGCAACATATTTTTCCT 647
consensus_5092#1 ACAAATGGAAACATTCATTCGTTTCCTAGAAATCGGATTGGAGT-----------TTCCT 440
******************* **************** * *** * *****
consensus_5092#0 TCATTATCCCAACGTTGAACTTCAATTCCATTTTCATTCGTTTTGAGATTAGGCACACCA 707
consensus_5092#1 TCATTACCCCAACGTTGAACTTCGATTCCATTTTCATTCGTTTTAAGAATAGGCACACAC 500
****** **************** ******************** *** *********
consensus_5092#0 AACACACTTCGTTCTTCAATTCTTGCCGTGAGTTTCTGTAGCATTCCATACCCAACGCCA 767
consensus_5092#1 AAGAC--TTCTTTCTTCAATCTTTGCTGTGAGTTTCTGTAGCATTTCAT----------- 547
** ** *** ********* **** ****************** ***
consensus_5092#0 GCTCCACTACATCATCGCACACTCAGAAATCGATGAGGCTTTCTCTCTCCTGATCTCCAG 827
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 CCTGTACGAAAATCCCACCCCATGGCAACAGGATTTAATATCATCAGGGTGCATGAAAGC 887
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 AGAACCTCCTACTCGATAGCCACAGCGAGTGGTAAGTGTGACACAAATTGAATTGCTTCC 947
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 AACCACGGCCTACAGGCCTCCACGGGTTCGTTGCGTACAGCCATGTAACCCTTTTCGCCC 1007
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 TGCTACATGGAGCTAGGCTTATCCTTAGCTCAGTGACACACATCTAGGAAAACTATAATT 1067
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 AACAAGTCAATTCGAACAAGCTCGCTCTCTCTCCCACACGATGGCTTCGAATTCGAATGG 1127
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 ACACATTGCTACAAGTTTCTGTTTTATCCAGAACTAGGTGCAATCAAAACGCAATACAGT 1187
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 CGACCATAGCAAAGTGTCAAGTGATTGGGAAAGTGTGGAGTGTAATTAATTTTCCTTACC 1247
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 ATTTGCTTTCGTGCTCTTTAGTTCAAGTGGAGCTCAGTGCGATGGGGTTTGTTTGAATGC 1307
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 ACCCGAAGACGATGTTGTTGTGTAGCAACAGAATCGAAGCGAAGTGATTTTAGAAGTATA 1367
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 GCCCATTCAACCAAGCGCAAAGAAGCATGTTGCGTTATAAAAGGAAGAATTTCATATTGG 1427
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 ACTTCATTTTGCACGGGGTATTGTTAAGCCAAATACTAGCTGCAGTCCGCACACATTATG 1487
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 AGAACCCCATCGGTAGAGTGTATTTCGTATAACAGCACAAACTAGCGATGAGTGTGTAGA 1547
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 GACCTACAGCCTACAATAGCATTGTCGTTCGGAAGGGCGTGTTGTTGATTTAGAAAAAAA 1607
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 TGAGGAAATGTATCTTAGCTTAGTGATCAAATGATGGTAAATTTCTAAATTAATTGCCAC 1667
consensus_5092#1 ------------------------------------------------------------
consensus_5092#0 CATTTGTT 1675
consensus_5092#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||