cluster # 5094

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Anopheles gambiae
cluster # 5094 cluster # 5094 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5094#0 length = 630 sequences # 1

consensus_5094#1 length = 594 sequences # 2
consensus_5094#2 length = 556 sequences # 1

consensusID : consensus_5094#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCATCAACCCGAAGGTGGGCGACTACATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGGCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTGGGCGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATCCGCAGTGTCGCGTTCCATCCGCGCTAT]

[+] EMBL BX605583             [CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCATCAACCCGAAGGTGGGCGACTACATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGGCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTGGGCGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATCCGCAGTGTCGCGTTCCATCCGCGCTAT]




>consensus_5094#0
CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCATCAACCCGAAGGTGGGCGACTAC
ATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGGCGCCCCGGTCCGACACGGTCGAC
AGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTG
GGCGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGG
GGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAG
CTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTG
CTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCCAACGACACATCCGCGTGTAC
GATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGC
ATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATG
TGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCC
ATCCGCAGTGTCGCGTTCCATCCGCGCTAT

consensusID : consensus_5094#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTT-TTC-TTTG-TTCTTCTTCTTCTTCTTCCTCTTCCAGTTCTTCATCGCTG-TATCCTCCAGGTCG-CTTCATCTTCCTCCGTCACCTCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAA-AAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGC-GGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGCGA-CCAA-CGA-ACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGGGTGACAATCTGTGATCGGCACGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGACAAACCGTACCA]

[+] EMBL AL930564             [CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTT TTC TTTG TTCTTCTTCTTCTTCTTCCTCTTCCAGTTCTTCATCGCTG TATCCTCCAGGTCG CTTCATCTTCCTCCGTCACCTCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAA AAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGC GGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGCGA CCAA CGA ACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGG                                                                          ]
[+] EMBL AL692620             [       CCCCCGAGGTTAATG CTGTTTTTTTTTTTTNCTCTTTTGCTTCTTCTTCTTCTTCTTCCTCTTCCAGTTCTTCATCGCTGCTATCCTCCAGGTCGCCTTCATCTTCCTCCGTCACCTCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTG CTGTTCGTGGCGACCCAACCGACACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGA G CATGGCGATTCATCCGAAGGGTGACAATCTGTGATCGGCACGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGACAAACCGTACCA]




>consensus_5094#1
CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTTTTCTTTGTTCTTCTTCTTCTTC
TTCCTCTTCCAGTTCTTCATCGCTGTATCCTCCAGGTCGCTTCATCTTCCTCCGTCACCT
CGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGG
TGACGGAGGAGGAGAAAAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCG
CCAGGTGACGTGGCACGGGCGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTAC
CGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGC
AAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGCGACC
AACGAACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGG
CTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGGGTGACAATCTGTGATCGGCA
CGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGACAAACCGTACCA

consensusID : consensus_5094#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATTCACTGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGTACAATGATTTACTGCAAAA]

[+] EMBL AL697208             [TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATTCACTGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGTACAATGATTTACTGCAAAA]




>consensus_5094#2
TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGT
GCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGC
GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAA
GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGC
GACCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGTA
CCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGAT
CGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCA
GCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATTCAC
TGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGTACA
ATGATTTACTGCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5094#0      -----------------------CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCA 37
consensus_5094#2      ------------------------------------------------------------
consensus_5094#1      CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTTTTCTTTGTTCTTCTTCTTCTTC 60
                                                                                  

consensus_5094#0      TCAACCCGAAGGTGGGCGACTACATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGG 97
consensus_5094#2      ------------------------------------------------------------
consensus_5094#1      TTCCTCTTCCAGTTCTTCATCGCTGTATCCTCCAGGTCGCTTCATCTTCCTCCGTCACCT 120
                                                                                  

consensus_5094#0      CGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGG 157
consensus_5094#2      ------------------------------------------------------------
consensus_5094#1      CGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGG 180
                                                                                  

consensus_5094#0      TGACGGAGGAGGAGAAGAAGCTGG--GCGTGCGGATCGTGATCACACACTTCCGCGAGGT 215
consensus_5094#2      TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGT 60
consensus_5094#1      TGACGGAGGAGGAGAAAAGCTGGG---CGTGCGCATCGTGATCACACACTTCCGCGAGGT 237
                      **   *** ** *         **    ***** **************************

consensus_5094#0      GCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGC 275
consensus_5094#2      GCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGC 120
consensus_5094#1      GCGCCAGGTGACGTGGCACGGGCGGG-CGACTACTTTGCCACCGTCATGCCGGACGGGGC 296
                      ************************** *********************************

consensus_5094#0      GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAA 335
consensus_5094#2      GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAA 180
consensus_5094#1      GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAA 356
                      ************************************************ ***********

consensus_5094#0      GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGC 395
consensus_5094#2      GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGC 240
consensus_5094#1      GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGC 416
                      ************************************************ ***********

consensus_5094#0      GACCCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGAT-GATGAAGAAGCTGT 454
consensus_5094#2      GACC-AACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGT 299
consensus_5094#1      GACC-AACGA-ACATCCGTGTGTACGATCTGGTGAAACAGTTGAT-GATGAAGAAGCTGT 473
                      **** ***** ******* ************************** **************

consensus_5094#0      ACCCGGGCTGCAAATGGATCTCGAG--CATGGCGATCCATCCGAAGGGTGACAATCTGCT 512
consensus_5094#2      ACCCGGGCTGCAAATGGATCTCGAG--CATGGCGATCCATCCGAAGGGTGACAATCTGCT 357
consensus_5094#1      ACCCGGGCTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGGGTGACAATCTG-T 532
                      ************************   ********* ********************* *

consensus_5094#0      GATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTA 572
consensus_5094#2      GATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTA 417
consensus_5094#1      GATCGGCACGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGAC-AAACCGTA 591
                      **********************      *********************** ********

consensus_5094#0      CCAGCAGCTGCGCATACACAATGCCGCCATCCGCAGTGTCGCGTTCCATCCG-CGCTAT- 630
consensus_5094#2      CCAGCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATT 477
consensus_5094#1      CCA--------------------------------------------------------- 594
                      ***                                                         

consensus_5094#0      ------------------------------------------------------------
consensus_5094#2      CACTGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGT 537
consensus_5094#1      ------------------------------------------------------------
                                                                                  

consensus_5094#0      -------------------
consensus_5094#2      ACAATGATTTACTGCAAAA 556
consensus_5094#1      -------------------