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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1103 fasta sequence
[CCGCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAA--ACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACGCAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAACGCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCCGCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAGGAAATGGAACACAAGGAAGCGATCAGCGATCTACAGCTGCAGGTGAAACAATTGATGGATGATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAGCTTCGCAGTCAGTGGGCCGAAGATCAGCGGACGCTGGAGGAGCTGGGCGTACAGCTGAGCGTCAGCAAGCTACAGATCTCGGGAGCTAAAAGAAAAAGGTGCCGGAGGAAGTCAGCNAAANGTTTCCGACCACAACCAAAGGGGGGACCGGGGGTNAATCCGGGTGTAAGGTGGCACTTGGCGGCAGGTTTGGACAACCGGGAATAANGGTCGTTCACNAATTGCACCCGGTTGCGAAGAAGGAGTTTAGGCATAACGCGCCAAANGCATTCAACCTGGGCGCGGAAAATTGTCTTGGGCAAAGGGATNTTTTGGGGCTTCCCAACGATTGGNTCNGGGAGGCACACTTTGNCCACACCCACTAAGGGGGGGAAACNCGGGTTTNTCCCCGCGGGAATNCACCANCAAGAAGNCACGGNGGAAACACCNGAACAGGGAAGGCNCNAAACACNAGTTCGCACGTTTTTGTGGACCACCATCAGGTTGGGNACACANTTTGCG]
[+] EMBL BM610424 [CCGCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAA ACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACGCAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAACGCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCCGCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAGGAAATGGAACACAAGGAAGCGATCAGCGATCTACAGCTGCAGGTGAAACAATTGATGGATGATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAG ]
[+] EMBL BX467382 [ agAATCGGCACGAGGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAATCGATCAATCTCGACATGTACCGTAAGCTACAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAACGCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCCGCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAGGAAATGGAACACAAGGAAGCGATCAGCGATCTGCAGCTGCAGGTGAAACAATTGATGGATGATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAGCTTCGCAGTCAGTGGGCCGAAGATCAGCGGACGCTGGAGGAGCTGGGCGTACAGCTGAGCGTCAGCAAGCTACAGATCTCGGGAGCTAAAAGAAAAAGGTGCCGGAGGAAGTCAGCNAAANGTTTCCGACCACAACCAAAGGGGGGACCGGGGGTNAATCCGGGTGTAAGGTGGCACTTGGCGGCAGGTTTGGACAACCGGGAATAANGGTCGTTCACNAATTGCACCCGGTTGCGAAGAAGGAGTTTAGGCATAACGCGCCAAANGCATTCAACCTGGGCGCGGAAAATTGTCTTGGGCAAAGGGATNTTTTGGGGCTTCCCAACGATTGGNTCNGGGAGGCACACTTTGNCCACACCCACTAAGGGGGGGAAACNCGGGTTTNTCCCCGCGGGAATNCACCANCAAGAAGNCACGGNGGAAACACCNGAACAGGGAAGGCNCNAAACACNAGTTCGCACGTTTTTGTGGACCACCATCAGGTTGGGNACACANTTTGCG]
consensusID : consensus_5103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[TGAGCGAAAAAGGGTGTTTATAAACTAACTTATGTATACACCAACATCCACTTCCACCCCATATATTCTTATTGTAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAGTACGCAAACCAAACTATATTTCTATGTTCTTATTGCTACGTTAATTTACCAAGTAGACTTAATAACGATGCCTTTTGCTGCCTAACTTACTGTCTAACCTATCATTATGCAGTATGCTCTTAACCCGACGGTAAAGTACCACAGTTGAATTGAGTTCTTGCCTCCTGAAGTCCTAAATAATAATTCGCTACAACGTATTAACTGCCGTAGCTTACACCGTAGTTTCTGTTCTGAACCACCAGAATGGTCATCTGTCAATAAAGTTCATTGTGTTACGATTGTACGAGAAATATAAATAAAAATGAAAACCACACTTTTATTTATTCCATAAATCCTGTAGCGAGAGTTGTGTGATCGATTGACAAATATGTAAAACGAAGCGCTTTTACAGCAATTAATAGCAGTATCTATTGTTGTTTTTTTCCGTTATTGGGATAGATAACCGAAACA]
[+] EMBL BX611851 [TGAGCGAAAAAGGGTGTTTATAAACTAACTTATGTATACACCAACATCCACTTCCACCCCATATATTCTTATTGTAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAGTACGCAAACCAAACTATATTTCTATGTTCTTATTGCTACGTTAATTTACCAAGTAGACTTAATAACGATGCCTTTTGCTGCCTAACTTACTGTCTAACCTATCATTATGCAGTATGCTCTTAACCCGACGGTAAAGTACCACAGTTGAATTGAGTTCTTGCCTCCTGAAGTCCTAAATAATAATTCGCTACAACGTATTAACTGCCGTAGCTTACACCGTAGTTTCTGTTCTGAACCACCAGAATGGTCATCTGTCAATAAAGTTCATTGTGTTACGATTGTACGAGAAATATAAATAAAAATGAAAACCACACTTTTATTTATTCCATAAATCCTGTAGCGAGAGTTGTGTGATCGATTGACAAATATGTAAAACGAAGCGCTTTTACAGCAATTAATAGCAGTATCTATTGTTGTTTTTTTCCGTTATTGGGATAGATAACCGAAACA]
consensusID : consensus_5103#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[AATCCCCCGAGGTTTACGTGTGGCGAACTGCAGGCTAAGGTTGAATCACTCACCACGACCAACGCGCTCATGAAGGAAGATTTGGCAATCGCACGGAACAGCCTAATGGCGCTGCAGGCCGAAAATGCTGCCCTCCGAAGGGCGTCCCAGCATGGGCACCCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGTAATATCAGGGCTTATGGGTATGGAAACTATGGGGTTACACAGGTTTGTATCACGAATTACTTCCAATGAATTTGGATCATTCGGGGCGAGATTGTCATTTCTTCCTTGGTTAAATTCGTTCTCGGGGCATCTGGTGGTCTTGTGAAAGGA]
[+] EMBL AL692884 [AATCCCCCGAGGTTTACGTGTGGCGAACTGCAGGCTAAGGTTGAATCACTCACCACGACCAACGCGCTCATGAAGGAAGATTTGGCAATCGCACGGAACAGCCTAATGGCGCTGCAGGCCGAAAATGCTGCCCTCCGAAGGGCGTCCCAGCATGGGCACCCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGTAATATCAGGGCTTATGGGTATGGAAACTATGGGGTTACACAGGTTTGTATCACGAATTACTTCCAATGAATTTGGATCATTCGGGGCGAGATTGTCATTTCTTCCTTGGTTAAATTCGTTCTCGGGGCATCTGGTGGTCTTGTGAAAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5103#0 ------------------------------------------------------------
consensus_5103#2 AATCCCCCGAGGTTTACGTGTGGCGAACTGCAGGCTAAGGTTGAATCACTCACCACGACC 60
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 ------------------------------------------------------------
consensus_5103#2 AACGCGCTCATGAAGGAAGATTTGGCAATCGCACGGAACAGCCTAATGGCGCTGCAGGCC 120
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 -------------------------------------CCGCGATCGAGGACAAGACGAAC 23
consensus_5103#2 GAAAATGCTGCCCTCCGAAGGGCGTCCCAGCATGGGCACCCGATCGAGGACAAGACGAAC 180
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 GTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGG 83
consensus_5103#2 GTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGG 240
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 CAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCC 143
consensus_5103#2 CAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCC 300
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 ATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGC 203
consensus_5103#2 ATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGC 360
consensus_5103#1 -----------------------------TGAGCGAAAAAGG---GTGTTTATAA---AC 25
*** * * * **** * *
consensus_5103#0 CAGCTCGAGGATATCAAGTCGATCAATCTCGAC--ATGTACCGTAAGCTACAGG-AGTGC 260
consensus_5103#2 CAGCTCGAGGATATCAAGTCGATCAATCTCGAC--ATGTACCGTAAGCTACAGGTAATAT 418
consensus_5103#1 TAACTTATGTATACACCAACATCCACTTCCACCCCATATATTCTTA-TTGTAGG-AGTGC 83
* ** * *** * ** * * * ** ** * * * *** * *
consensus_5103#0 GAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACGCAGCGCGAATCG 320
consensus_5103#2 CAGGGCTTATGGGTATG-GAAACTA---TGGGGTTAC--ACAGGTTTGTATCACGAATT- 471
consensus_5103#1 GAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCG 143
* * * * ***** * ** * * * * * *****
consensus_5103#0 ATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAAC 380
consensus_5103#2 ACTTCCAATGAATTTGGATCATTCGGGGCGAGATTG---TCATTTCTTCCTTGGTTAAAT 528
consensus_5103#1 ATGGCCAGTGCAATTACGCAGCTGGAGAAAAAGTACGCAAACCAAACTATATTTCTATGT 203
* *** ** * ** * * * * * * *
consensus_5103#0 GCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCC 440
consensus_5103#2 TCGTTCTCGGGGCATCTGGTGGTCTTGTGAAAGGA------------------------- 563
consensus_5103#1 TC-TTATTGCTACGTTAATTTACCAAGTAGACTTAATAACGATGCCTTTTGCTGCCTAAC 262
* ** ** *
consensus_5103#0 GCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAG 500
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 TTACTGTCTAACCTATCATTATGCAGTATGCTCTTA-ACCCGACGGTAAAGTACCACAGT 321
consensus_5103#0 GAAATGGAACACAAGGAAGCGATCAGCGATCTACAGCTGCAGGTGAAACAATTGATGGAT 560
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 TGAATTGAGTTCTTGC---CTCCTGAAGTCCTAAATAATAATTCGCTACAACGTATTAAC 378
consensus_5103#0 GATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAGCTTCGCAGTCAGTGGGCC 620
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 TGCCGTAGCTTACACCGTAGTTTCTGTTCTGAACCACCAGAA--TGGTCATCTGTCAAT- 435
consensus_5103#0 GAAGATCAGCGGACGCTGGAGGAGCTGGGCGTACAGCTGAGCGTCAGCAAGCTACAGATC 680
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 AAAGTTCATTGTGTTACGATTGTACGAGAAATATAAATAAAAATGA--AAACCACACTTT 493
consensus_5103#0 TCGGGAGCTAAAAGAAAAAGGTGCCGGAGGAA-GTCAGCNAAANGTTTCCGACCACAACC 739
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 TATTTATTCCATAAATCCTGTAGCGAGAGTTGTGTGATCGATTGACAAATATGTAAAACG 553
consensus_5103#0 AAAGGGGGGACCGGGGGTNAATCCGGGTGTAAGGTGGCACTTGGCGGCAG-GTTTGGACA 798
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 AAGCGCTTTTACAGCAATTAATAGCAGTATCTATTGTTGTTTTTTTCCGTTATTGGGATA 613
consensus_5103#0 ACCGGGAATAANGGTCGTTCACNAATTGCACCCGGTTGCGAAGAAGGAGTTTAGGCATAA 858
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 GATAACCGAAACA----------------------------------------------- 626
consensus_5103#0 CGCGCCAAANGCATTCAACCTGGGCGCGGAAAATTGTCTTGGGCAAAGGGATNTTTTGGG 918
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 GCTTCCCAACGATTGGNTCNGGGAGGCACACTTTGNCCACACCCACTAAGGGGGGGAAAC 978
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 NCGGGTTTNTCCCCGCGGGAATNCACCANCAAGAAGNCACGGNGGAAACACCNGAACAGG 1038
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 GAAGGCNCNAAACACNAGTTCGCACGTTTTTGTGGACCACCATCAGGTTGGGNACACANT 1098
consensus_5103#2 ------------------------------------------------------------
consensus_5103#1 ------------------------------------------------------------
consensus_5103#0 TTGCG 1103
consensus_5103#2 -----
consensus_5103#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||