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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1220 fasta sequence
[CACAATTGCCCCAGGTTTTGCAGGGTGGATCGATCGATCATCGATCGATTATGGTGGTGAACACAAGTCAGTNAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGCAAACGTCGATCGATAACCGTTATCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCCTTCCCCTTGTGTGTTGTTGCCACATATGCCATTAGCCAATCAGTCGTNCCAGCGATCAGTCATTGTCAGCTCAGGCAGTTGGCAATTNCAGGCACGCATGCATGCCGTGGTGTGCACTCCCCGCGGTGTCATAGCATCCCTACNTCATGTCACAATTGTCCCAAACACCAANGTTCACGCATCGCATTCCTAACACCACACAGCACCACCAAAACACCCACACACACCGCATGCCATATGTCACGGCACGCGTCACAAGCAACACCACACACCACCACACGTCCAAGCCACCCACANTTTCCCCGCCCCAGCGCCACAGTGTTGTCCAAGGTCAAGCGCGCATTCCGNCGCCCAACAGGCACACAGCCCATCACCGACCCCAGCAGCCCNTCGCGGTCACACCCATAGGCGGTTNCCTTATNCTNTCATCTATNCCTCTATANTCCCCTAGGNCGCTTATTCATCAACCCATCTTAGGTCAGNATCCANNCACANGNTTAGCCAGCGAGCACGTACTCCATTCACCATTGGTGGCCACACCGCCAATCTNGGCACANACCTTCCCCGGCNANACCGGGTTCAATAGGTTAGGNGCACGGGGGCTTNNTAGGGTTACAACGGGGGTTAGNCACACCACAAGCCAATTCANCTACAAAACCAAACAATATACCCCCACATATACCGGAACCGGCTTCCGTANAATACANCCCGGACGTTTCACGGAGCTTACAACTAAGGNTACTGGGGACAACTGNAATACGCAAAGGGNAAATACCAACATTTNTCATAACACAGCATACCTTTCNTTCGACACTAACTACATCTAGACTTCCCCTGCACGGTTTTANACAACCCATTATTAAAGGGTACGTAGTCGAAAACAGNTACACACAACAAAACGGGGGCACAAAGCACATTANTTAACCGTTACCGGTCTNTTGCCACCTCTANGGTACGGGCCATGCGNGGCATTCTAATCATTAACCTCTCCACTAGGTACCGGGACACTTGACGCAACCATTCCNNGCAACGGAA]
[+] EMBL AL693197 [CACAATTGCCCCAGGTTTTGCAGGGTGGATCGATCGATCATCGATCGATTATGGTGGTGAACACAAGTCAGTNAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGCAAACGTCGATCGATAACCGTTATCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCCTTCCCCTTGTGTGTTGTTGCCACATATGCCATTAGCCAATCAGTCGTNCCAGCGATCAGTCATTGTCAGCTCAGGCAGTTGGCAATTNCAGGCACGCATGCATGCCGTGGTGTGCACTCCCCGCGGTGTCATAGCATCCCTACNTCATGTCACAATTGTCCCAAACACCAANGTTCACGCATCGCATTCCTAACACCACACAGCACCACCAAAACACCCACACACACCGCATGCCATATGTCACGGCACGCGTCACAAGCAACACCACACACCACCACACGTCCAAGCCACCCACANTTTCCCCGCCCCAGCGCCACAGTGTTGTCCAAGGTCAAGCGCGCATTCCGNCGCCCAACAGGCACACAGCCCATCACCGACCCCAGCAGCCCNTCGCGGTCACACCCATAGGCGGTTNCCTTATNCTNTCATCTATNCCTCTATANTCCCCTAGGNCGCTTATTCATCAACCCATCTTAGGTCAGNATCCANNCACANGNTTAGCCAGCGAGCACGTACTCCATTCACCATTGGTGGCCACACCGCCAATCTNGGCACANACCTTCCCCGGCNANACCGGGTTCAATAGGTTAGGNGCACGGGGGCTTNNTAGGGTTACAACGGGGGTTAGNCACACCACAAGCCAATTCANCTACAAAACCAAACAATATACCCCCACATATACCGGAACCGGCTTCCGTANAATACANCCCGGACGTTTCACGGAGCTTACAACTAAGGNTACTGGGGACAACTGNAATACGCAAAGGGNAAATACCAACATTTNTCATAACACAGCATACCTTTCNTTCGACACTAACTACATCTAGACTTCCCCTGCACGGTTTTANACAACCCATTATTAAAGGGTACGTAGTCGAAAACAGNTACACACAACAAAACGGGGGCACAAAGCACATTANTTAACCGTTACCGGTCTNTTGCCACCTCTANGGTACGGGCCATGCGNGGCATTCTAATCATTAACCTCTCCACTAGGTACCGGGACACTTGACGCAACCATTCCNNGCAACGGAA]
consensusID : consensus_5119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1059 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGTAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGAT---GTCGTGGACTCCCCCGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTTACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGAATGAAACTCCGAACGTATGTGGAGGGTTTGTAAGGGTGAAAAGATACTAACAAATTCCAATTCGAGGTCGATACCGCTTCCCGTTAATAGTTGGTTCTTGTTTTGTATCACTTTTTAAGTCTTTTTTTATTTTTCTCCTGCGTTACACATTTTGTTTTTACATAAACAACGGCAAACAATATACGTACGTCTGCTCTTTGTCGGATGCGGATTTATATACTCATGGTCGGAACTGAGCAAATTCCGAAACGACATCCCACAACAACATCATCTCCATCCGAAGTAGCGATCACCAATGGCGGCGCGAGATCCAGTACGAACGGTACGAACAGAACCGATTCTGATTGACGGCTCGAGCACGAGTCCGACTATTTGAAGCGAGAAT]
[+] EMBL BM629104 [CCGCCCACGCGTCCGCCCACGCGTCCGTAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGAT GTCGTGGACTCCCCCGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTTACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTG ]
[+] EMBL BM609516 [ ccGCACAGTCGTCCCGCGTAGTATATAGTCGGAGTGGAATTAGACGATGATGCCGTGGTGGACTCCCCCGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTAACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACATACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGAATGAAACTCCGAACGTATGTGGAGGGTTTGTAAGGGTGAAAAGATACTAACAAATTCCAATTCGAGGTCGATACCGCTTCCCGTTAATAGTTGGTTCTTGTTTTGTATCACTTTTTAAGTCTTTTTTTATTTTTCTCCTGCGTTACACATTTTGTTTTTACATAAACAACGGCAAACAATATACGTACGTCTGCTCTTTGTCGGATGCGGATTTATATACTCATGGTCGGAACTGAGCAAATTCCGAAACGACATCCCACAACAACATCATCTCCATCCGAAGTAGCGATCACCAATGGCGGCGCGAGATCCAGTACGAACGGTACGAACAGAACCGATTCTGATTGACGGCTCGAGCACGAGTCCGACTATTTGAAGCGAGAAT]
consensusID : consensus_5119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[CACTGCTGCAAATTCCCAAGGCTGATAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGATGCCGTGGTGGACTCCCGGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTAACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTTTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGATTGAAACTCCGAACGTATGTGGAGGGTTTGTAAG]
[+] EMBL BX623993 [CACTGCTGCAAATTCCCAAGGCTGATAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGATGCCGTGGTGGACTCCCGGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTAACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTTTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGATTGAAACTCCGAACGTATGTGGAGGGTTTGTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5119#1 ------------------------------------------------------------
consensus_5119#2 ------------------------------------------------------------
consensus_5119#0 CACAATTGCCCCAGGTTTTGCAGGGTGGATCGATCGATCATCGATCGATTATGGTGGTGA 60
consensus_5119#1 ----------------------------------CCGCCCACGCGTCCGCCCACGCGTCC 26
consensus_5119#2 -----------------------------------CACTGCTGCAAATTCCCAAG-GCTG 24
consensus_5119#0 ACACAAGTCAGTNAGAACGCAAGCATAACCCATCTCGCTGTTG-ATCGTTGCAAACGTCG 119
* * * ** *
consensus_5119#1 GT--AAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGA----GC 80
consensus_5119#2 AT--AAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGA----GC 78
consensus_5119#0 ATCGATAACCGTTATCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGC 179
* * ** * * * ** * ** ** * * ** * ** * **
consensus_5119#1 TACAGCCGCTGCTCGAAT-----CGGTACAGAAGGACTCATCCGGACAGTCGAAC-AACA 134
consensus_5119#2 TACAGCCGCTGCTCGAAT-----CGGTACAGAAGGACTCATCCGGACAGTCGAAC-AACA 132
consensus_5119#0 CATCCCTTCCCCTTGTGTGTTGTTGCCACATATGCCATTAGCCAATCAGTCGTNCCAGCG 239
* * * ** * * * *** * * * * ** ****** * * *
consensus_5119#1 AT-ATCGATGGGCGGGATACGTCGATGG--ATCAAAGCTAGGTGGAAAGGACAAAGAAGC 191
consensus_5119#2 AT-ATCGATGGGCGGGATACGTCGATGG--ATCAAAGCTAGGTGGAAAGGACAAAGAAGC 189
consensus_5119#0 ATCAGTCATTGTCAGCTCAGGCAGTTGGCAATTNCAGGCACGCATGCATGCCGTGGT-GT 298
** * ** * * * * * * *** ** ** * * * * * * *
consensus_5119#1 GCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGC 251
consensus_5119#2 GCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGC 249
consensus_5119#0 GCACTCCCCGCGGTG-TCATAGCATCCCTACNTCATGTCACAATTGTCCCAAACACCAAN 357
*** * ** * ** * ***** * * *** * *
consensus_5119#1 ATA-ACCCATCTCGCTGTTGAT------------CGTTGAAACGTCGATCGATAAC---C 295
consensus_5119#2 ATA-ACCCATCTCGCTGTTGAT------------CGTTGAAACGTCGATCGATAAC---C 293
consensus_5119#0 GTTCACGCATCGCATTCCTAACACCACACAGCACCACCAAAACACCCACACACACCGCAT 417
* ** **** * * * * * **** * * * * *
consensus_5119#1 GTTTCATGCCATGATTGCTGTCCC-----------CGCACCCCTCCTCGCCTA--CCATC 342
consensus_5119#2 GTTTCATGCCATGATTGCTGTCCC-----------CGCACCCCTCCTCGCCTA--CCATC 340
consensus_5119#0 GCCATATGTCACGGCACGCGTCACAAGCAACACCACACACCACCACACGTCCAAGCCACC 477
* *** ** * *** * * **** * * ** * * *** *
consensus_5119#1 GCCATCCTTCCC-TTGTGGTGT-GCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGT 400
consensus_5119#2 GCCATCCTTCCC-TTGTGGTGT-GCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGT 398
consensus_5119#0 CACANTTTCCCCGCCCCAGCGCCACAGTGTTGTCCAAGGTCAAGC-GCGCATTCCGNCGC 536
** * *** * * ** * * ** *** * *** * * * *
consensus_5119#1 CGGAGTGGAAT-TAGACGATGAT--GTCGTG--GACTCCCCCGGGATGATCCTCTATGTA 455
consensus_5119#2 CGGAGTGGAAT-TAGACGATGAT--GCCGTGGTGGACTCCCGGGGATGATCCTCTATGTA 455
consensus_5119#0 CCAACAGGCACACAGCCCATCACCGACCCCAGCAGCCCNTCGCGGTCACACCCATAGGCG 596
* * ** * ** * ** * * * ** ** ** *
consensus_5119#1 ATGTCCA-ACACAACGTACGATC-------GATCTTACAAAACACAAACAAAAACGATGA 507
consensus_5119#2 ATGTCCA-ACACAACGTACGATC-------GATCTAACAAAACACAAACAAAAACGATGA 507
consensus_5119#0 GTTNCCTTATNCTNTCATCTATNCCTCTATANTCCCCTAGGNCGCTTATTCATCAACCCA 656
* ** * * * ** ** * * * * * *
consensus_5119#1 TGT-AGGACGGTAAG-AAACAAACACACAGTAAGC-AGAATTTCCGCCAGCGAAGGTGTA 564
consensus_5119#2 TGT-AGGACGGTAAG-AAACAAACACACAGTAAGC-AGAATTTCCGCCAGCGAAGGTGTA 564
consensus_5119#0 TCTTAGGTCAGNATCCANNCACANGNTTAGCCAGCGAGCACGTACTCCATTCAC--CATT 714
* * *** * * * * ** * ** *** ** * * * *** * *
consensus_5119#1 AGTAGGGAT-TCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGT---T 620
consensus_5119#2 AGTAGGGAT-TCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTTT---T 620
consensus_5119#0 GGTGGCCACACCGCCAATCTNGGCACAN-ACCTTCCCCGGCNANACCGGGTTCAATAGGT 773
** * * ** *** *** * *** * * * * * **** * *
consensus_5119#1 TTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAG-GCTTATAATGTGAACGAATGAA 679
consensus_5119#2 TTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAG-GCTTATAATGTGAACGATTGAA 679
consensus_5119#0 TAGGNGCACGGGGGCTTNNTAGGGTTACAACGGGGGTTAGNCACACCACAAGCCAATTCA 833
* * ** * * * *** *** * * * * * * * * *
consensus_5119#1 ACTCCGAACGTATGTGGAGGGTTT----GTAAGGGTGAAAAGATACTAACAAATTCCAAT 735
consensus_5119#2 ACTCCGAACGTATGTGGAGGGTTT----GTAAG--------------------------- 708
consensus_5119#0 NCTACAAAACCAAACAATATACCCCCACATATACCGGAACCGGCTTCCGTANAATACANC 893
** * ** * **
consensus_5119#1 TCGA--GGTCGATACCGCTTCCCGTTAATAGTTGGTTCTTGTTTTGTATCACTTTTTAAG 793
consensus_5119#2 ------------------------------------------------------------
consensus_5119#0 CCGGACGTTTCACGGAGCTTACAACTAAGGNTACTGGGGACAACTGNAATACGCAAAGGG 953
consensus_5119#1 TCTTTTTTTATTTTTCTCCTGCGTTACACATTTTGTTTTTACATAAACAACGGCAAACAA 853
consensus_5119#2 ------------------------------------------------------------
consensus_5119#0 NAAATACCAACATTTNTCATAACACA-GCATACCTTTCNTTCGACACTAACTACATCTAG 1012
consensus_5119#1 TATACGTACGTCTGCTCTTTGTCGGATGCGGATTTATATACTCATGGTCGGAACTGAGCA 913
consensus_5119#2 ------------------------------------------------------------
consensus_5119#0 ACTTCCCCTGCACGGTTTTANACAACCCATTATTAAAGGGTACGTAGTCGAAAACAGNTA 1072
consensus_5119#1 AATTCCGAAACGACATCCCACAACA-ACATCATCTCCATCCGAAGTAGCGATCACCAATG 972
consensus_5119#2 ------------------------------------------------------------
consensus_5119#0 CACACAACAAAACGGGGGCACAAAGCACATTANTTAACCGTTACCGGTCTNTTGCCACCT 1132
consensus_5119#1 GCGGCGCGAGATCCAGTACGAACGGTACGAACAGAACCGATTCTGATTGACGGCTCGAGC 1032
consensus_5119#2 ------------------------------------------------------------
consensus_5119#0 CTANGGTACGGGCCATGCGNGGCATTCTAATCATTAACCTCTCCACTAGGTACCGGGACA 1192
consensus_5119#1 ACGAGTCCGACTATTTGAAGCGAGAAT- 1059
consensus_5119#2 ----------------------------
consensus_5119#0 CTTGACGCAACCATTCCNNGCAACGGAA 1220
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||