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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence
[CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAGTGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATAACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTATTGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC]
[+] EMBL AL695367 [CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAGTGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATAACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTATTGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC]
consensusID : consensus_5120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCCGTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAGTAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACCACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATACTAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGGGGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGCCACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA]
[+] EMBL AL693263 [GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCCGTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAGTAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACCACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATACTAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGGGGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGCCACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA]
consensusID : consensus_5120#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAGGAACAGCCACTAACAGGTATATTGGATGGTGCA]
[+] EMBL BX612634 [GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAGGAACAGCCACTAACAGGTATATTGGATGGTGCA]
[+] EMBL BX602833 [ cttTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTGTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACTTTAGTAGCGGTTTCCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5120#1 ------------------------------------------------------------
consensus_5120#2 ------------------------------------------------------------
consensus_5120#0 CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAG 60
consensus_5120#1 --------------------------------------GAATTGCCGAGGTTAAACGTAT 22
consensus_5120#2 ----------------------------------------GGAGCAGCGGAAGAAGGAGT 20
consensus_5120#0 TGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGT 120
** * ** ** * *
consensus_5120#1 TTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGT 82
consensus_5120#2 TTGTCAAGTATTCCAAAAAGTTTAGCACCACCC----TAAAGGAGTACTTTAAGGAGGGA 76
consensus_5120#0 TTGTCAAGTATTCCAAAAAGTTTAGCACCACCC----TAAAGGAGTACTTTAAGGAGGGA 176
** * * * * * ** ** * ** * * ** *** * *
consensus_5120#1 ATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCA--AACCAAATGGTGCTACTGGAT 140
consensus_5120#2 GAGGCTAATGCCGTATTCCTTTATTCCATTC-CGCCAGCATTCACTAACTTTTACTACGA 135
consensus_5120#0 GAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTAT 236
* * ** * **** * * * * ** *
consensus_5120#1 AAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGA 200
consensus_5120#2 AAGAATGGAGTATTATTAATAT---------------TATAGTTACTATTACA------- 173
consensus_5120#0 GATAACGGTGAAGAATAAGTGCGAGTAGTGCT--GATGACGGTCGTCAACAGGGCTGGGA 294
* * * * * * ** *
consensus_5120#1 ACGAAGAGTACC-TTAGTAGACGGTTTCCACAGCAAAACCCGTT-GAAGCGCGACACACT 258
consensus_5120#2 -CCACGGCTAC--TTGGCGCGCTGCCCAGGCAG-AATATCAGTT-T---TCCCCCCCAGA 225
consensus_5120#0 AGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTAN 354
* * * * * ** ** *
consensus_5120#1 TTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCA 318
consensus_5120#2 CCAAGCTGTTTA-AATGACGTGCAA-CATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAA 283
consensus_5120#0 TTGTATTGTCNA-TTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACC-TCCGA 412
** * * * *** * * * *
consensus_5120#1 GTGCCAAGCGTGCCTATTTACTACTTGTGTGT-CGTAGTGTAGTAG-------------- 363
consensus_5120#2 AAACAAAACGTATTTTCCCGGGCCCCCGGCAT-ATATTTATACGCA-------------- 328
consensus_5120#0 CTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCT 472
* *** * * * * * *
consensus_5120#1 ---TAGTGTGTGTAGTAAGGGCGATAGCTT--AAGGGTGCTTCTTACTATCA--CNCCAT 416
consensus_5120#2 ---TATTATACATAA-ATATGTTATTGCCT--GTATGCATTTTGTCTCATTC--CAAGGT 380
consensus_5120#0 GGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAG 532
* * * * * * * *
consensus_5120#1 CACCACGGTTTCAATTCCCTGGGTAA----NGGTGCGTGCNGGAGTGTGTAGTGTGTCAG 472
consensus_5120#2 CCTAACAACGCCAAACCA------AA----TGGTGC-TACTGGA--------TAAAAGAA 421
consensus_5120#0 CNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCG 592
* * * * * ** ** * * * *
consensus_5120#1 GGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGG 532
consensus_5120#2 AAAAATCCCCAATCCGTTTCCCTCCAG-----GGACAA------AGTGTGTGTTACAAGG 470
consensus_5120#0 CACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCC 652
* * * * * *
consensus_5120#1 ATTCATACTAATTAAACAAACCACCATTAACGACTC------TAGGGCTAAACGGTCAAT 586
consensus_5120#2 A--------GAAGAAGAGTACC-TTAGTAGCGGTTT------CCACGCAAAAC--CCGTT 513
consensus_5120#0 AACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGC 712
* * * * * * ****
consensus_5120#1 TTCGGGCTACTCGGGGCACGCTAGNCNAAATT--GGCACGGCGAAACAGAGGATTACANA 644
consensus_5120#2 GAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAA 573
consensus_5120#0 CTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGC-ACCANACG 771
* * * * * ** * * *
consensus_5120#1 CACGTAATTNATTTGCCACAAC---AAANCCACCTGCTTAAAGACANCAACACAACCCGG 701
consensus_5120#2 TATTTACATTTTCTGTAGTGGA---GGGAGGAACAGCC-ACTAACAGGTATATTGGATGG 629
consensus_5120#0 ACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCA 831
** * * ** *
consensus_5120#1 GAA---------------------------------- 704
consensus_5120#2 TGCA--------------------------------- 633
consensus_5120#0 CCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC 868
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||