cluster # 5121

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Anopheles gambiae
cluster # 5121 cluster # 5121 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5121#0 length = 933 sequences # 2

consensus_5121#1 length = 766 sequences # 1
consensus_5121#2 length = 255 sequences # 1

consensusID : consensus_5121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 933
fasta sequence

                              [CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCCCTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGTCGTTCTTGTGCGTGTGTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTTTTGCCAGTAATTCGATTATGCGACAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCTACATAAAAATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAACACAGTACTTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTACGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCAGTTTCTCCGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAATAAAACAAAACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCGCGGCACACAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGCCCCGGGGCTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATTTTTGTGTGTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTATCCATCTCACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT]

[+] EMBL BM596870             [CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCCCTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGTCGTTCTTGTGCGTGTGTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTTTTGCCAGTAATTCGATTATGCGACAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCTACATAAAAATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAACACAGTACTTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTACGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGC                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM648259             [                                                                                                                                                                                                                                                                                                                                                                                                  TTTCTTTTGTTAAGTACGTTACTGTTACGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCAGTTTCTCCGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAATAAAACAAAACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCGCGGCACACAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGCCCCGGGGCTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATTTTTGTGTGTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTATCCATCTCACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT]




>consensus_5121#0
CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCC
CTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGT
CGTTCTTGTGCGTGTGTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATTG
ATTCCCTTTTGCCAGTAATTCGATTATGCGACAACAGATGCCGCAACCTTGACGGGAGAG
GAACGCTTTCGGTAGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCTACATAAA
AATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAACACAGTAC
TTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTACGAAGAA
CGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCG
TATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAG
CATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCAGTTTCTC
CGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAATAAAACAA
AACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCGCGGCACA
CAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGCCCCGGGG
CTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATTTTTGTGT
GTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTATCCATCT
CACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT

consensusID : consensus_5121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 766
fasta sequence

                              [TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAACGAGAGCCGTCTCTGTACTCTGATGATTGCTCGAGTGCGTGTGTTTGTATGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGGGAAAGCGGGAGTGGAACTGGAACTGGCACTTGCGGGTGCGGTGTATTTGGTTAGGGTGAAGTCATCGGACAGCGGTGACCAGTCCAGAGCGCGTCCAGTGTGTGTAGTACTAGTGTATAGTATAATTGTCGGCCCTCACCGTAGTTCAATTANCTTCAATACAAAGACGAACATCCGTGTGTGCAGGTTNGTGTCTGTCGGCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTATNTTGCCAGTAATATCGATTATGCGACNAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTACCGTTTTATGTGGCCCTATTAGCGCTACATAAAAATCAACATACACACAACACACACAGACGCGCGTATATAATTCTACACCACGTCNAAACACAGCACCTTTCGGTCCGATTGTAGTTATCGTTATGTTANACTTATGTTCANGTACGTTACTGTTACGAAAAACGCGGTCTGCTAGAAAAGAGAACGGACACGCNTTTTCTTCTCCACCTAGTTCTCCATGATNTAGTGTCGATGTAGNAGTGTGTCAGGCTACTNNNCNCCTGACTTGTAANCNCTTGGCCGGAT]

[+] EMBL AL693270             [TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAACGAGAGCCGTCTCTGTACTCTGATGATTGCTCGAGTGCGTGTGTTTGTATGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGGGAAAGCGGGAGTGGAACTGGAACTGGCACTTGCGGGTGCGGTGTATTTGGTTAGGGTGAAGTCATCGGACAGCGGTGACCAGTCCAGAGCGCGTCCAGTGTGTGTAGTACTAGTGTATAGTATAATTGTCGGCCCTCACCGTAGTTCAATTANCTTCAATACAAAGACGAACATCCGTGTGTGCAGGTTNGTGTCTGTCGGCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTATNTTGCCAGTAATATCGATTATGCGACNAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTACCGTTTTATGTGGCCCTATTAGCGCTACATAAAAATCAACATACACACAACACACACAGACGCGCGTATATAATTCTACACCACGTCNAAACACAGCACCTTTCGGTCCGATTGTAGTTATCGTTATGTTANACTTATGTTCANGTACGTTACTGTTACGAAAAACGCGGTCTGCTAGAAAAGAGAACGGACACGCNTTTTCTTCTCCACCTAGTTCTCCATGATNTAGTGTCGATGTAGNAGTGTGTCAGGCTACTNNNCNCCTGACTTGTAANCNCTTGGCCGGAT]




>consensus_5121#1
TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAACGAGAGCCGTCTCTGTACTCTGATG
ATTGCTCGAGTGCGTGTGTTTGTATGGGCGTTTGTGAATGTAATACATAAAGGGTGTATT
GTGCGGGAAAGCGGGAGTGGAACTGGAACTGGCACTTGCGGGTGCGGTGTATTTGGTTAG
GGTGAAGTCATCGGACAGCGGTGACCAGTCCAGAGCGCGTCCAGTGTGTGTAGTACTAGT
GTATAGTATAATTGTCGGCCCTCACCGTAGTTCAATTANCTTCAATACAAAGACGAACAT
CCGTGTGTGCAGGTTNGTGTCTGTCGGCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAG
TGTCGGACAATTGCTTCAAAACTATTGATTCCCTATNTTGCCAGTAATATCGATTATGCG
ACNAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTACC
GTTTTATGTGGCCCTATTAGCGCTACATAAAAATCAACATACACACAACACACACAGACG
CGCGTATATAATTCTACACCACGTCNAAACACAGCACCTTTCGGTCCGATTGTAGTTATC
GTTATGTTANACTTATGTTCANGTACGTTACTGTTACGAAAAACGCGGTCTGCTAGAAAA
GAGAACGGACACGCNTTTTCTTCTCCACCTAGTTCTCCATGATNTAGTGTCGATGTAGNA
GTGTGTCAGGCTACTNNNCNCCTGACTTGTAANCNCTTGGCCGGAT

consensusID : consensus_5121#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAGCGAGAGCCCGTCTCCTGTCTCTGTGTTCGCTCGAGTGCGTGTGTTATGTATAGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGCACTCTGCGGCGTGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCAGTCCAGGGACGCGTCCAGCTGTCTTN]

[+] EMBL BX469372             [CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAGCGAGAGCCCGTCTCCTGTCTCTGTGTTCGCTCGAGTGCGTGTGTTATGTATAGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGCACTCTGCGGCGTGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCAGTCCAGGGACGCGTCCAGCTGTCTTN]




>consensus_5121#2
CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAGCGAGAGCCCGTCT
CCTGTCTCTGTGTTCGCTCGAGTGCGTGTGTTATGTATAGGGCGTTTGTGAATGTAATAC
ATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGCACTCTGCGGCG
TGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCAGTCCAGGGACG
CGTCCAGCTGTCTTN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5121#1      -----------TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAA------CGAGAGCC 43
consensus_5121#2      -CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAG----CGAGAGCC 55
consensus_5121#0      CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCC 60
                                   *  *  **            * **    **  *       *   ***

consensus_5121#1      -GTCTCTGTACTCTGATG--ATTGCTCGAG-TGCGTGTGT-T-TGTAT-GG-GCGTTTGT 95
consensus_5121#2      CGTCTCCTGTCTCTG-TG--TTCGCTCGAG-TGCGTGTGT-TATGTATAGG-GCGTTTGT 109
consensus_5121#0      CTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGT 120
                           *     **   *    *   ** **  *    *   * ***   *  * ** ***

consensus_5121#1      GAATGTAATACATAAAGGGTGTATTGTGCG-GGAAAGCGGGAG-TGGAACTGGAACTGGC 153
consensus_5121#2      GAATGTAATACATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGC 169
consensus_5121#0      CGTTCTTGTGCGTGT-GTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATT 179
                         * *  * * *   *  ***     **  *     ***    * *      ****   

consensus_5121#1      ACT-TGCGG-GTGCG-GTG-TATTTGGTTAGGGTGAAG--TCATCGGACAGCGGTGACCA 207
consensus_5121#2      ACTCTGCGGCGTGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCA 229
consensus_5121#0      GAT-TCCCTTTTGCCAGTA--ATTCGATTATG-CGACAACAGATGCCGCAACCTTGACGG 235
                        * * *    ***  **   *** * *** *  **      **    ** *  ****  

consensus_5121#1      GTCCAGAG-CGCGTCCAGTGTGTGTAGTACTAGTGTATAGTATAATTGTCGGCCCTCACC 266
consensus_5121#2      GTCCAGGGACGCGTCCAGC-TGTCTTN--------------------------------- 255
consensus_5121#0      GAG-AGGAACGCTTTCGGT-AGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCT 293
                      *   **   *** * * *   *  *                                   

consensus_5121#1      GTAGTTCAATTANCTTCAATACAAAGACGAACATCCGTGTGTGCAGGTTNGTGTCTGTCG 326
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      ACATAAAAATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAAC 353
                                                                                  

consensus_5121#1      GCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAGTGTCGGACAATTGCTTCAAAACTATT 386
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      ACAGTACTTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTA 413
                                                                                  

consensus_5121#1      GATTCCCTATNTTGCCAGTAATATCGATTATGCGACNAACAGATGCCGCAACCTTGACGG 446
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      CGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTG 473
                                                                                  

consensus_5121#1      GAGAGGAACGCTTTCGGTAGCATACGAAAGTACCGTTTTATGTGGCCCTATTAGCGCTAC 506
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      TGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGAT 533
                                                                                  

consensus_5121#1      ATAAAAATCAACATACACACAACACACACAGACGCGCGTATATAATTCTACACCACGTCN 566
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      AAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCA 593
                                                                                  

consensus_5121#1      AAACACAGCACCTTTCGGTCCGATTGTAGTTATCGTTATGTTANACTTATGTTCANGTAC 626
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      GTTTCTCCGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAAT 653
                                                                                  

consensus_5121#1      GTTACTGTTACGAAAAACGCGGTCTGCTAGAAAAGAGAACGGACACGCNTTTTCTTCTCC 686
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      AAAACAAAACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCG 713
                                                                                  

consensus_5121#1      ACCTAGTTCTCCATGATNTAGTGTCGATGTAGNAGTGTGTCAGGCTACTNNNCNCCTGAC 746
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      CGGCACACAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGC 773
                                                                                  

consensus_5121#1      TTGTAANCNCTTGGCCGGAT---------------------------------------- 766
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      CCCGGGGCTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATT 833
                                                                                  

consensus_5121#1      ------------------------------------------------------------
consensus_5121#2      ------------------------------------------------------------
consensus_5121#0      TTTGTGTGTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTA 893
                                                                                  

consensus_5121#1      ----------------------------------------
consensus_5121#2      ----------------------------------------
consensus_5121#0      TCCATCTCACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT 933