cluster # 5122

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Anopheles gambiae
cluster # 5122 cluster # 5122 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5122#0 length = 765 sequences # 1

consensus_5122#1 length = 764 sequences # 3

consensusID : consensus_5122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACACACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGCTAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTATCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNGTAACACATNCGGGTTCTGCTACCCCTGGATATTATCCCGTACCACAATTTATTNGGCCTTATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTTCTNTGCAACTCCACAAACACTAGCGACTATNGCACANACAACACACACACACCCAGCGCCAATTGCTTNGCCAGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAGACAGGNGCTTACACTCAACCACAGCATCTGGCACTGGGCACCGTCCGGANTAGTTAACACAAAC]

[+] EMBL AL693274             [CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACACACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGCTAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTATCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNGTAACACATNCGGGTTCTGCTACCCCTGGATATTATCCCGTACCACAATTTATTNGGCCTTATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTTCTNTGCAACTCCACAAACACTAGCGACTATNGCACANACAACACACACACACCCAGCGCCAATTGCTTNGCCAGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAGACAGGNGCTTACACTCAACCACAGCATCTGGCACTGGGCACCGTCCGGANTAGTTAACACAAAC]




>consensus_5122#0
CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACA
TCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANG
GGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAA
GCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACA
CACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTC
GTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGC
TAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTA
TCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNG
TAACACATNCGGGTTCTGCTACCCCTGGATATTATCCCGTACCACAATTTATTNGGCCTT
ATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTTCTNTGCAACTCC
ACAAACACTAGCGACTATNGCACANACAACACACACACACCCAGCGCCAATTGCTTNGCC
AGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAGACAGGNGCTTACACTCAAC
CACAGCATCTGGCACTGGGCACCGTCCGGANTAGTTAACACAAAC

consensusID : consensus_5122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 764
fasta sequence

                              [CCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATATGTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATT-GTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACACATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCATCTATTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG]

[+] EMBL BX627419             [CCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATATGTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATT GTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAA                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BX626202             [                                                           GGAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATATGTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATT GTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACACATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCATCTATTCCAATGCTGTCACGC                    ]
[-] EMBL AL929631             [                                                                                                                                                                                                                         TGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATTGGTTTTTTTATAAACATTCTTTTGTATTGTGTTTTT GTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATG TTTGTATGACACGCTCCATACACATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCATCTCTTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG]




>consensus_5122#1
CCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAG
GAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCA
CATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATAT
GTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCT
CGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACC
AGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTG
TTTCGTGTAATTGTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGT
TTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTT
GAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTG
TTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACAC
ATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAA
AACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAA
GCATCTATTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5122#0      CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACA 60
consensus_5122#1      ----------------------------------------CCTTTGCTGGCCTGCGAACA 20
                                                              ********************

consensus_5122#0      TCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANG 120
consensus_5122#1      TCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAAAG 80
                      ********************************************************** *

consensus_5122#0      GGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAA 180
consensus_5122#1      GGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAA 140
                      ************************************************************

consensus_5122#0      GCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACA 240
consensus_5122#1      GCTGCGT--GTATATCCCTATATAAACACTCCAAGTATATATGTA-TATATGCACACACA 197
                      ******    *********************************** **************

consensus_5122#0      CACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTC 300
consensus_5122#1      CACACG-TGTGTACAC-GCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTC 255
                      ****** ********* *******************************************

consensus_5122#0      GTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGC 360
consensus_5122#1      GTATTT--AAGCTATGAGTAGACGAGCTTTGATGAA-TTCCTT-TTAC-CAGCATTTGGC 310
                      *** **   ******************** *****  ****** **** ***********

consensus_5122#0      TAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTA 420
consensus_5122#1      TA-CCCTCCTTCCGCT-TGTATGTG--CAGCACATGTGTCACT-GTGATTGTGT-GTTTC 364
                      ** ************* *******    *************** **** *  ** ** * 

consensus_5122#0      TCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNG 480
consensus_5122#1      GTGTAATTGTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTC 424
                        *** *   *        *  * ** * *  *   * * * *   * *      * *  

consensus_5122#0      TAACACATNCGGGTTCTGCTACCCCTGGATATTA--TCCCGTACCACAATTTATTNGG-- 536
consensus_5122#1      CTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAA 484
                        ***  *  *  ****  *       *     *  *   * * ** ***  *** *   

consensus_5122#0      --------CCTTATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTT 588
consensus_5122#1      AAAACAAACGTTAAACGATCAA-ACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTT 543
                              * ***  *   *** *   * *       **        **        ***

consensus_5122#0      CTNTGCAACTCCACAAACACTAGCG-AC-TATNGCACANACAACACAC-----ACACACC 641
consensus_5122#1      GTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACACATC 603
                       *  *    *          *   * ** ***       *  **** *     ***** *

consensus_5122#0      CAGCGCCAATTGCTTNGCCAGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAG 701
consensus_5122#1      CATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAAC 663
                      **   *    *     *   *     **   *    *     *     *  ** **  * 

consensus_5122#0      ACAGGNGCTTACACTCAACCACAGCATCTGGCACTGGGCACC-GTCCGGANTAGTTAACA 760
consensus_5122#1      AAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCA 723
                      * *   ** **** **  **         **  * *   *   * *   *  * * * **

consensus_5122#0      CAAAC------------------------------------ 765
consensus_5122#1      TCTATTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG 764
                         *