cluster # 5132

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Anopheles gambiae
cluster # 5132 cluster # 5132 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5132#0 length = 1075 sequences # 3

consensus_5132#1 length = 908 sequences # 1

consensusID : consensus_5132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1075
fasta sequence

                              [ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATAATATACTATATACAGATAAACGTAAGCAATAAAAAAACAAAAGTAGAGAAACTGATAAGTCAACCCGACAATGGCAAAGTAAAACTGGAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAAAACAGAACAGAACAGAAAAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGTATAATAATCGATATATACCAACACTTATATATATATACATTAAATATATACAAAGTAAACGAACCCTAGGGTGTAAGGTACTAGTGAACAACACAAAGAAAACACAAAATGAAAGCACATTTTATTCCCCATCATTGGGAGGGGGAGAGAAAAAAAACTCATTCATTACGTCAATCTCCATACCTCCTCATACGGACACATTTCACGTCACACGAAAACACTCTTAACCAAACCACTCCCTTAGATGGTTAGAAATGTAAGGAAAGACACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCAATCTTACCATACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACATCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTT-AAAATATTATACCTATACACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTTTGGTTAGGAAAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGTGTGTGTAAGAGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACCCACACACACACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCCAATGGCTATGATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAATAAACAACCCGATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA]

[+] EMBL BX621337             [ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATAATATACTATATACAGATAAACGTAAGCAATAAAAAAACAAAAGTAGAGAAACTGATAAGTCAACCCGACAATGGCAAAGTAAAACTGGAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAAAACAGAACAGAACAGAAAAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGTATAATAATCGATATATACCAACACTTATATATATATACATTAAATATATACAAAGTAAACGAACCCTAGGGTGTAAGGTACTAGTGAACAACACAAAGAAAACACAAAATGAAAGCACATTTTATTCCCCATCATTGGGAGGGGGAGAGAAAAAAAACTCATTCATTACGTCAATCTCCATACCTCCTCATACGGACACATTTCACGTCACACGAAAACACTCTTAACCAAACCACTCCCTTAGATGGTTAGAAATGTAAGGAAAGACACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCAATCTTACCATACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACATCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTT AAAATATTATACCTATACACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATA                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX625867             [                                                                                                                                                                        AAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAA     AACAGAACAGAAAAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGCATAATAATCGATATATACCAACACTTATATATATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX626743             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACAGAGAGAGAGAGAGAGAGACACGTTATCTAATACATCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTTAAAAATATTATACCTATACACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTTTGGTTAGGAAAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGTGTGTGTAAGAGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACCCACACACACACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCCAATGGCTATGATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAATAAACAACCCGATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA]




>consensus_5132#0
ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAA
GTCTAATTTATTTATATATAATATACTATATACAGATAAACGTAAGCAATAAAAAAACAA
AAGTAGAGAAACTGATAAGTCAACCCGACAATGGCAAAGTAAAACTGGAAACGAAATTTA
AACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAAAACAGAACAGAACAGAA
AAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGTATAATAATCGATATATAC
CAACACTTATATATATATACATTAAATATATACAAAGTAAACGAACCCTAGGGTGTAAGG
TACTAGTGAACAACACAAAGAAAACACAAAATGAAAGCACATTTTATTCCCCATCATTGG
GAGGGGGAGAGAAAAAAAACTCATTCATTACGTCAATCTCCATACCTCCTCATACGGACA
CATTTCACGTCACACGAAAACACTCTTAACCAAACCACTCCCTTAGATGGTTAGAAATGT
AAGGAAAGACACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCA
ATCTTACCATACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACA
TCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTTAAAATATTATACCTATAC
ACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTT
TGGTTAGGAAAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGT
GTGTGTAAGAGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACC
CACACACACACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCC
AATGGCTATGATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAAT
AAACAACCCGATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA

consensusID : consensus_5132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 908
fasta sequence

                              [CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATGAGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATAAACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGGCAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCATGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGTTGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCACCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTCAAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAAAACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACTACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCACATGAAAAACACTCTATAAACCACAACCACTCCCTATCAGAATCGGGTAAAAGAAAAATGGTACAGGAAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCACAACTTGANAAATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTGAACACAANNCACAAGACAGCAGAAGAANNNGCACAAGCAGAACNGANCACGTACTCTCTAAATAACCNCNCATGTATCCGG]

[+] EMBL AL693409             [CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATGAGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATAAACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGGCAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCATGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGTTGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCACCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTCAAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAAAACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACTACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCACATGAAAAACACTCTATAAACCACAACCACTCCCTATCAGAATCGGGTAAAAGAAAAATGGTACAGGAAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCACAACTTGANAAATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTGAACACAANNCACAAGACAGCAGAAGAANNNGCACAAGCAGAACNGANCACGTACTCTCTAAATAACCNCNCATGTATCCGG]




>consensus_5132#1
CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATG
AGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAG
AACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATA
AACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGG
CAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCA
TGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGT
TGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCA
CCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTC
AAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAA
AACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACT
ACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCAC
ATGAAAAACACTCTATAAACCACAACCACTCCCTATCAGAATCGGGTAAAAGAAAAATGG
TACAGGAAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCACAACTTG
ANAAATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTGAACACAANNCACA
AGACAGCAGAAGAANNNGCACAAGCAGAACNGANCACGTACTCTCTAAATAACCNCNCAT
GTATCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5132#0      ------------------------------------------------------------
consensus_5132#1      CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATG 60
                                                                                  

consensus_5132#0      ----------------------ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAG 38
consensus_5132#1      AGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAG 120
                                            **************************************

consensus_5132#0      AACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATAATATACTATATACAGATA 98
consensus_5132#1      AACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATA 180
                      ***************************************** ******************

consensus_5132#0      AACGTAAGCAATAAAAAAAC-AAAAGTAGAGA--AACTG-ATAAGTCAACCCGACAATGG 154
consensus_5132#1      AACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGG 240
                      ************** ***** ****** ****   **** ********************

consensus_5132#0      CAAAGTAAAACTGG--AAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTG-AAGCA 211
consensus_5132#1      CAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCA 300
                      ********* ****  ************************************** *****

consensus_5132#0      TGGCAAGCGTAAAACAGAACAGAACAGAAAAATAA----CACAGAAAAACGTGT------ 261
consensus_5132#1      TGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGT 360
                      ***** ********************** * * **    ***    ****          

consensus_5132#0      ----GAGATGCA--TTATAAAAAGAGTATAATAATCGATATATACCAACACTTATAT--- 312
consensus_5132#1      TGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCA 420
                             *****  **** * *       * *  ** **  * * *  *** *****   

consensus_5132#0      ---------------------ATATATACATT-------AAATATATACAAAGTAAAC-- 342
consensus_5132#1      CCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTC 480
                                           ****  *****       **  *** ** **  **    

consensus_5132#0      --------GAACCCT---AGGGTGTAAGG---TACT----AGTGAA-CAACACAAAG-AA 382
consensus_5132#1      AAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAA 540
                               *****    *** ****  *    **     * **** ********** **

consensus_5132#0      AACACAAAATGAAAGCACATT-TTATTCCCCATCATTGGGAGGGGGAGAGAAAAAAAACT 441
consensus_5132#1      AACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACT 600
                      ********************* ************************    * ********

consensus_5132#0      ---CATTC-ATTACGTCAA-TCTCCATACCTCC-TCATACGGACACA-TTTCAC-GTCAC 493
consensus_5132#1      ACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCAC 660
                         ***** ********** ************* ************  ****** *****

consensus_5132#0      ACGAAAA-CACTCTT--AACCA-AACCACTCCCTTAGATGGTTAGAAATGTAAGGAAAGA 549
consensus_5132#1      ATGAAAAACACTCTATAAACCACAACCACTCCCT------ATCAGAATCGGGTAAAAGAA 714
                      * ***** ******   ***** ***********       * ****  *     **  *

consensus_5132#0      CACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCAATCTTACCA 609
consensus_5132#1      AAATGGTACAGG-AAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCA 773
                       * ***   * * ***  ** *         ***    *** ** **  ****   ****

consensus_5132#0      TACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACATCATGTATC 669
consensus_5132#1      CA-ACTTGANA-----AATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTG 827
                       * *  *** *     *   **  * * * *   **      ***    *****    * 

consensus_5132#0      GGCAGGATGCCAACGGAAACGATGATATTTTTTAAAATATTATACCTATACACATGCCGC 729
consensus_5132#1      AACACAANNCACAAGACAGCAGAAGAANNNGCACAAGCAG---AACNGANCACGTACT-C 883
                        **  *  *  * *  * *      *       **  *    * *    *** * *  *

consensus_5132#0      AATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTTTGGTTAGGA 789
consensus_5132#1      TCTAAATAACCNCNCATGTATCCGG----------------------------------- 908
                        *  * **     ** * *  * *                                   

consensus_5132#0      AAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGTGTGTGTAAG 849
consensus_5132#1      ------------------------------------------------------------
                                                                                  

consensus_5132#0      AGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACCCACACACAC 909
consensus_5132#1      ------------------------------------------------------------
                                                                                  

consensus_5132#0      ACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCCAATGGCTAT 969
consensus_5132#1      ------------------------------------------------------------
                                                                                  

consensus_5132#0      GATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAATAAACAACCC 1029
consensus_5132#1      ------------------------------------------------------------
                                                                                  

consensus_5132#0      GATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA 1075
consensus_5132#1      ----------------------------------------------