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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1412 fasta sequence
[AGCTGACAGGGCACGGTCCGTCCGGTACATGACCCGAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGACCCGTTGCGTGCGATGAGGATGATGATGGCGGAGAGCAAACTCATAAACCCGGACGCTGTGCAGCAGCGCCTGCAGGGGGCTATCCTGTCGGAGCGTGCGGAACGGAGCAAACATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGACTATCATCGATTACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCACATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTAACAACGACGGCCAA-TCGGCGGCTGCTG-CGCGTCGATGCTCGATAACATCCATGCTGTAAACAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTCCAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAGGATCAAACAGTACATCGACGCCAAATTTGTACAGCTTGAGCATTTTGTCGACAACCGACTGGCGGACCTGGCAGCTCGGCAAGATCAAAAGCTGGACCGTTTGCTGGAACTGCTACAAGAGCAACGAGGATCGGCCCAAAATGGATCGCACGGAAATAAGGCGGAACAATAATTTGCGTTGCAATAGTGCCACCACGATCTCTCCCTGTGTGGGAAGTACCTTATCTTCCCTGTGGTCTTACATTTTCCGTCCGTGGATTATACCCTTGGATGTACAGCTCTCCGACTACACGATGGGAAATTTTAATAGAGGTCCATGTCCCATTTTCCTTATACCTCATTTTGAACGAAATAATTATTGGTTTCCTTCGGTAGTGAGTAGTTTTTAGATTTATTGACACATACAAATA]
[+] EMBL BX603004 [AGCTGACAGGGCACGGTCCGTCCGGTACATGACCCGAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGC ]
[+] EMBL CNS09P8Q [ GTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGCTCGATCGAAAACCATGCATCCGCGGACACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGACCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGAACCAAGAGCCGTGCGAAATGCATCTGACCATAACCCCATTGTATCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGACCCGTTGCGTGCGATGAGGATGATGATGGCGGAGAGCAAACTCATAAACCCGGACGCTGTGCAGCAGCGCCTGCAGGGGGCTATCCTGTCGGAGCGTGCGGAACGGAGCAAACATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGACTATCATCGATTACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCACATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTAACAACGACGGCCAA TCGGCGGCTGCTG CGCGTCGATGCTCGATAACATCCATGCTGTAAACAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTCCAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAG ]
[-] EMBL CNS09P8R [ AGCAGCGCCTGCAGGGGGCTATCCTGTCGGGGCGTGCGGAACGGAGCAAACATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGACTATCATCGATAACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCACATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTAACAACGACGGCCAATTCGGCGGCTG TGCCGCGTCGATGCTCGATAACATCCATGCTGTAAACAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTCCAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAGGATCAAACAGTACATCGACGCCAAATTTGTACAGCTTGAGCATTTTGTCGACAACCGACTGGCGGACCTGGCAGCTCGGCAAGATCAAAAGCTGGACCGTTTGCTGGAACTGCTACAAGAGCAACGAGGATCGGCCCAAAATGGATCGCACGGAAATAAGGCGGAACAATAATTTGCGTTGCAATAGTGCCACCACGATCTCTCCCTGTGTGGGAAGTACCTTATCTTCCCTGTGGTCTTACATTTTCCGTCCGTGGATTATACCCTTGGATGTACAGCTCTCCGACTACACGATGGGAAATTTTAATAGAGGTCCATGTCCCATTTTCCTTATACCTCATTTTGAACGAAATAATTATTGGTTTCCTTCGGTAGTGAGTAGTTTTTAGATTTATTGACACATACAAATA]
consensusID : consensus_5138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[GCAGATCGCCCGAGGTTTAAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGAACCGTTGCGTGCGATGAGGATGCTGATGGCGGAGAGCAAACTCATTAACCGGACGCTG]
[+] EMBL AL693679 [GCAGATCGCCCGAGGTTTAAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGAACCGTTGCGTGCGATGAGGATGCTGATGGCGGAGAGCAAACTCATTAACCGGACGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5138#0 AGCTGACAGGGCACGGTCCGTCCGGTACATGACCCGAGTTCGTACGGATCGGCACAGCAG 60
consensus_5138#1 ------------GCAGATCGCCCGA-----GGTTTAAGTTCGTACGGATCGGCACAGCAG 43
* * ** *** * ************************
consensus_5138#0 AAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGA 120
consensus_5138#1 AAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGA 103
************************************************************
consensus_5138#0 GCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCA 180
consensus_5138#1 GCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCA 163
************************************************************
consensus_5138#0 CTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGG 240
consensus_5138#1 CTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGG 223
************************************************************
consensus_5138#0 TTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGT 300
consensus_5138#1 TTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGT 283
************************************************************
consensus_5138#0 ACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCC 360
consensus_5138#1 ACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCC 343
************************************************************
consensus_5138#0 GGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGAC 420
consensus_5138#1 GGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGAC 403
************************************************************
consensus_5138#0 ATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCA 480
consensus_5138#1 ATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCA 463
************************************************************
consensus_5138#0 TTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCA 540
consensus_5138#1 TTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCA 523
************************************************************
consensus_5138#0 ACACAGACCCGTTGCGTGCGATGAGGATGATGATGGCGGAGAGCAAACTCATAAACCCGG 600
consensus_5138#1 ACACAGAACCGTTGCGTGCGATGAGGATGCTGATGGCGGAGAGCAAACTCATTAACC-GG 582
******* ********************* ********************** **** **
consensus_5138#0 ACGCTGTGCAGCAGCGCCTGCAGGGGGCTATCCTGTCGGAGCGTGCGGAACGGAGCAAAC 660
consensus_5138#1 ACGCTG------------------------------------------------------ 588
******
consensus_5138#0 ATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGAC 720
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 TATCATCGATTACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCAC 780
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 ATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTA 840
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 ACAACGACGGCCAATCGGCGGCTGCTGCGCGTCGATGCTCGATAACATCCATGCTGTAAA 900
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 CAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTC 960
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 CAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAGGATCAAACAGTACATCGA 1020
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 CGCCAAATTTGTACAGCTTGAGCATTTTGTCGACAACCGACTGGCGGACCTGGCAGCTCG 1080
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 GCAAGATCAAAAGCTGGACCGTTTGCTGGAACTGCTACAAGAGCAACGAGGATCGGCCCA 1140
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 AAATGGATCGCACGGAAATAAGGCGGAACAATAATTTGCGTTGCAATAGTGCCACCACGA 1200
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 TCTCTCCCTGTGTGGGAAGTACCTTATCTTCCCTGTGGTCTTACATTTTCCGTCCGTGGA 1260
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 TTATACCCTTGGATGTACAGCTCTCCGACTACACGATGGGAAATTTTAATAGAGGTCCAT 1320
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 GTCCCATTTTCCTTATACCTCATTTTGAACGAAATAATTATTGGTTTCCTTCGGTAGTGA 1380
consensus_5138#1 ------------------------------------------------------------
consensus_5138#0 GTAGTTTTTAGATTTATTGACACATACAAATA 1412
consensus_5138#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||