cluster # 5145

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Anopheles gambiae
cluster # 5145 cluster # 5145 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5145#0 length = 908 sequences # 2

consensus_5145#1 length = 568 sequences # 1
consensus_5145#2 length = 508 sequences # 1

consensusID : consensus_5145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 908
fasta sequence

                              [CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGTTTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTCATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGTGTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGTGATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGTACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAACAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGT-CCGGTAG-ATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCC-TCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAA-CACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGCTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGCTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTATTGCCCCTCTTATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGAAGGCGTACATCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACCAAACAACANCNAAAANA]

[+] EMBL BX621420             [CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGTTTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTCATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGTGTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGTGATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGTACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAACAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGT CCGGTAG ATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCC TCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAA CACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGT                                                                                                                                                                                                                                                       ]
[+] EMBL AL694045             [                                                                                                AGAGGGAAATGAGAAGCAA  TTCATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGTGTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGTGATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGTACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAA CAACAAAAAACAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCCGGTAGCATG   TTTCCTCTNAAATGACACTCCCTTTTGCTG CTCTCCA CTTACCACGGTGCTGATATTACCCCCCATCCCTTGTGCACCGCTCTCCTCCTTCACG TTCTTCCATTGTGATGCG TTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACCACACACACACACACGCTTCCATCATCCCTCCCCCCGGAGCTGCAGCGGTTTGAAACCTGGCTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGCTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTATTGCCCCTCTTATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGAAGGCGTACATCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACCAAACAACANCNAAAANA]




>consensus_5145#0
CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGT
TTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTC
ATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGT
GTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGT
GATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGT
ACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAA
CAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTC
GCAATAGGGTCCGGTAGATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCC
ACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTT
TTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTC
AAAGGAGCAAACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGG
TTTGAAACCTGGCTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGG
CTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTATTGCCCCTCT
TATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGAAGGCGTACA
TCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACCAAACAACAN
CNAAAANA

consensusID : consensus_5145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTAGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAAAAAGAAAAAAAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAGAAGACGAAGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAAGAAGAAGAAGAAGAAAACTCACTT]

[+] EMBL BM625055             [CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTAGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAAAAAGAAAAAAAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAGAAGACGAAGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAAGAAGAAGAAGAAGAAAACTCACTT]




>consensus_5145#1
CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTATT
GTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCA
AACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTT
GAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTAGTGGTCG
ACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCAC
ACACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAG
ATCCCGCACCACCGTTTACGCAACAAACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAA
AAAGAAAAAAAGGAAGAAGAAGAAGAAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAG
AAGACGAAGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAA
AAAAGAAGAAGAAGAAGAAAACTCACTT

consensusID : consensus_5145#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCGGTAGATGTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACATACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACCCACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAGGAAAAAGAAGAAAAGAAAA]

[-] EMBL BM605930             [CAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCGGTAGATGTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACATACACACGCTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGTGTGAGGGTGACGCACGACACCTTCCGCTGGTGGTCGACCTTTTTTTATGTACAGCCGGTCGCCGGATAAGTAAACTATGCCCTCTTATACACCCACACCCACACACACAATCACTGCACTTTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACAAACAAGGAAAAAGAAGAAAAGAAAA]




>consensus_5145#2
CAAATATTGTAGAGGGGCGCGCGCCACGTCGCAATAGGGTCCGGTAGATGTTTTTTTTTT
TTAATGACACTCCCTTTTGCTGCCTCTCCACCTTACCACGGTGCTGATATTACCCCCCTC
CCTTGTGCACCGCTCTCCTCCTTCACGTTTTTTTTTTATTGTGATGCGTTTCCCTCGAAG
CAATACAACGACTTACTAGCGTGGTGGGCTCAAAGGAGCAAACACACACACATACACACG
CTTCCATCATCCCTCCCCCCGCAGCTGCAGCGGTTTGAAACCTGGGCTCCGTGGTGGGGT
GTGAGGGTGACGCACGACACCTTCCGCTGGTGGTCGACCTTTTTTTATGTACAGCCGGTC
GCCGGATAAGTAAACTATGCCCTCTTATACACCCACACCCACACACACAATCACTGCACT
TTGGTTTGGTAGGCGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCA
ACAAACAAGGAAAAAGAAGAAAAGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5145#0      CACGAGGGCAATATGGAGCCCAGGAAAAAAAAAACAAAAACAAAAAACACAATCACTCGT 60
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      TTAGTGTAGGGCCTGAGGTGGGGGTTGGGTGTGGCGAGAGGGAAATGAGAAGCAAATTTC 120
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      ATTCTTTTACAGACAGTTTACGTGCCAATAGTATGTGTGTTTGTGTGCGTGTATGTGTGT 180
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      GTGTGTGTAAAAGACAAACATAGGGAGAAAATGTGGGCGGGAATTAGGAAAAATGGGAGT 240
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      GATAGGAGAGATATAGGTGAGGGCAATGAGGGCCCAGCAAACGATCGGGCAAGGCAGTGT 300
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      ACCCAACGGGGTGTACCGATTAATCTTATTCCTCCTAACCAAAAACAAACCAACAAAAAA 360
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      CAAGAGCAAAAATTAGGAAACACATTTTAGCAAATATTGTAGAGGGGCGCGCGCCACGTC 420
consensus_5145#2      ------------------------------CAAATATTGTAGAGGGGCGCGCGCCACGTC 30
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      GCAATAGGGTCCGGTAGATGTTTTTTTTTTTTTAATGACACTCCCTTTTGCTGCCTCTCC 480
consensus_5145#2      GCAATAGGGTCCGGTAGATGTTTTTTTTTTTT-AATGACACTCCCTTTTGCTGCCTCTCC 89
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      ACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTT 540
consensus_5145#2      ACCTTACCACGGTGCTGATATTACCCCCCTCCCTTGTGCACCGCTCTCCTCCTTCACGTT 149
consensus_5145#1      ---------CCACGCGTCCGCCCACGCGTCCGCTTGTGCACCGCTCTCCTCCTTCACGTT 51
                               *   **         * *   * ****************************

consensus_5145#0      TTTTTT--ATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGC 598
consensus_5145#2      TTTTTTTTATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGC 209
consensus_5145#1      TTTTTT--ATTGTGATGCGTTTCCCTCGAAGCAATACAACGACTTACTAGCGTGGTGGGC 109
                      ******  ****************************************************

consensus_5145#0      TCAAAGGAGCAAACACACACACA------CACACGCTTCCATCATCCCTCCCCCCGCAGC 652
consensus_5145#2      TCAAAGGAGCAAACACACACACATA----CACACGCTTCCATCATCCCTCCCCCCGCAGC 265
consensus_5145#1      TCAAAGGAGCAAACACACACACACACACACACACGCTTCCATCATCCCTCCCCCCGCAGC 169
                      ***********************      *******************************

consensus_5145#0      TGCAGCGGTTTGAAACCTGG-CTCCGTGNTGGCGGTGTGAGGGTGACGCACGACACCTTC 711
consensus_5145#2      TGCAGCGGTTTGAAACCTGGGCTCCGTGGTGG-GGTGTGAGGGTGACGCACGACACCTTC 324
consensus_5145#1      TGCAGCGGTTTGAAACCTGGGCTCCGTGGTGG-GGTGTGAGGGTGACGCACGACACCTTC 228
                      ******************** ******* *** ***************************

consensus_5145#0      CGCTGGTGGCTCGACCTTNCACACTATGTCAAAGCCCGGTCGCCGGATAAGTAAACCTAT 771
consensus_5145#2      CGCTGGTGG-TCGACCTTTTTT--TATGTACAG--CCGGTCGCCGGATAAGTAAAC-TAT 378
consensus_5145#1      CGCTAGTGG-TCGACCTTTTTT--TATGTACAG--CCGGTCGCCGGATAAGTAAAC-TAT 282
                      **** **** ********      *****  *   ********************* ***

consensus_5145#0      TGCCCCTCTTATTACACCCACAACCCACAACACACAAATCACCTGCACTTTGGTTAAAGA 831
consensus_5145#2      G--CCCTCTTAT-ACACCCACA-CCCACA-CACACAA-TCAC-TGCACTTTGGTTTGGTA 431
consensus_5145#1      G--CCCTCTTAT-ACACCCACA---CACA-CACACAA-TCAC-TGCACTTTGGTTTGGTA 333
                         ********* *********   **** ******* **** ************    *

consensus_5145#0      AGGCGTACATCANCTACTGTTGCACANTCTCCTAGATCCCCGACCACGTTTTACGCCACC 891
consensus_5145#2      GG--------CGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACA 483
consensus_5145#1      GG--------CGTCCATTTTTGTGCACATCTCTAGATCCCGCACCACCGTTTACGCAACA 385
                       *        *  * * * ***  **     *********  *****  ******* ** 

consensus_5145#0      AAACAACANCNAAAANA------------------------------------------- 908
consensus_5145#2      AACAAGGAAAAAGAAGAAAAGAAAA----------------------------------- 508
consensus_5145#1      AACAAAGAAAAAGAAGAAAAGAAAAAGAAGAAGAAAAAGAAAAAAAGGAAGAAGAAGAAG 445
                      **  *  *   * ** *                                           

consensus_5145#0      ------------------------------------------------------------
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      AAGAAGAAAAGAAAAGTAAGAAGAAAGAAAAGAAGAAGACGAAGAAGAAGAAGAAGATGA 505
                                                                                  

consensus_5145#0      ------------------------------------------------------------
consensus_5145#2      ------------------------------------------------------------
consensus_5145#1      AAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAAGAAGAAGAAGAAGAAAACTCA 565
                                                                                  

consensus_5145#0      ---
consensus_5145#2      ---
consensus_5145#1      CTT 568