cluster # 5153

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Anopheles gambiae
cluster # 5153 cluster # 5153 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5153#0 length = 977 sequences # 2

consensus_5153#1 length = 696 sequences # 2

consensusID : consensus_5153#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 977
fasta sequence

                              [TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTTATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATATAGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATAACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATAGTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCTGTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTGCAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCCCAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTTTGGCTGGTCCGTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACGGCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCCCT-GCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTTTCTTTCCCAACGTTTGGCAGCTAAAAAA]

[+] EMBL CNS09NIY             [TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTTATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATATAGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATAACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATAGTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCTGTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTGCAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCCCAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTTTGGCTGGTCCGTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACGGCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCCCT GCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTT                            ]
[-] EMBL CNS09NIX             [                               TTGAGATCTCCCTTAGAGCATCTACGCTTATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATATAGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATAACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATAGTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCTGTCTTACCCCTTCTGAAAGGCCCACGACTTGCTCTCGCTCTCTGGATGCTGATACCATTGCAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCCCAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTGTGGCTGGTCCGTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACGGCGAGGTTCGTGCTTGATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCACTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTCTTTCTTTCCCAACGTTTGGCAGCTAAAAAA]




>consensus_5153#0
TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTT
ATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATAT
AGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATA
ACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATA
GTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCT
GTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTG
CAGTGAGTCATTGTGTGTAACTTCTGTTGCCTTTCTTTGCAGGTCTATGCAACAAGTGCA
CAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCTTT
AACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCATT
CTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTCGT
CCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTTCC
CAGATTCTTCTCTCCGCATGACCGCTGATAACCGCCGAGCGAGTTTGGCTGGTCCGTCCA
AGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACGCCACG
GCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGACAAACT
CCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGC
CCTGCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTTTCTTTCCCAAC
GTTTGGCAGCTAAAAAA

consensusID : consensus_5153#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence

                              [CAGCTCGGGCACATGTGGCCTTTTTTTTTATTTTTTTTTTTCGCCATTAAACTA-TATTTTACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGTTTTACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTGTAACCTTGTGCCCTACATCGCATCTGTCAACCTGCATCGATACACGCGATACATCCTTCGTGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTGTGTTGCATAATTGCCAAACTCGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGCATTCTGACTCTACCCTTCGTCGCGGACGCGT-TACTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGTGTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCTCTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTC-TTCTTCCCCAACGTTTGGCAGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC]

[-] EMBL CNS08LMC             [CAGCTCGGGCACATGTGGCCTTTTTTTTTATTTTTTTTTTTCGCCATTAAACTA TATTTTACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGTTTTACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTGTAACCTTGTGCCCTACATCGCATCTGTCAACCTGCATCGATACACGCGATACATCCTTCGTGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTGTGTTGCATAATTGCCAAACTCGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGCATTCTGACTCTACCCTTCGTCGCGGACGCGT TACTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGTGTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCTCTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTC TTCTTC                                                 ]
[+] EMBL CNS08LMD             [                               TTTTTTTTTTCGCCATTTTACTATTATTTTACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGAAAAACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTGTAACCTTGTGCCCTACATCGCATCTGTAAACCTGCATCGATACACGCGATAAATCCTTCGTGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTTTTTTGCATAATTGCCAAAC CGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTGGCATTCTGACTCTACCCTTCGTCGCGGACGCGTACGCTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGTGTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACAAAAAACAATAATTAATGATGCCCT GCTTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTTCTCTTTCTTTCCCAACGTTTGGCAGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC]




>consensus_5153#1
CAGCTCGGGCACATGTGGCCTTTTTTTTTATTTTTTTTTTTCGCCATTAAACTATATTTT
ACATAAATAACACAAACGTATAAATCACAACCAAAAATAACATTATCCAACCCAACACAA
ACAACTTTGGGTTTTACATTTAAAAATTTAAATTTGAATCTATTGCTACATTAATTTATC
GAAATTAAATTAAATCATATCCATGCACAATCACGCGTAAAGGTTAACCAACGACCCCTG
TAACCTTGTGCCCTACATCGCATCTGTCAACCTGCATCGATACACGCGATACATCCTTCG
TGGTGTTGGTTACAGGCCGTCCGACAGCAAAGAGTGTGTGTTGCATAATTGCCAAACTCG
CAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGCATTCTGACTC
TACCCTTCGTCGCGGACGCGTTACTTCGCGGTAAATCTGTCCTGGGATCTCGTGGCCGGT
GTTGTTGCTCAAGCCCGACGCACTTTTTTTGCGAACCACACTCTAGACAAACTCCCTTCA
GAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAATGATGCTCTCTCG
TCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTCTTCTTCCCCAACGTTTGGC
AGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5153#0      TTTGTTTTGTGTGGAGTTTTTATTATGGTCCTTGAGATCTCCCTTAGAGCATCTACGCTT 60
consensus_5153#1      ------------------------------------------------------------
                                                                                  

consensus_5153#0      ATCAATCTCTATCAATATACAATTAGGTACATGCCCTATGTCATCCGATTGATGTCATAT 120
consensus_5153#1      ------------------------------------------------------------
                                                                                  

consensus_5153#0      AGAAACAATATATTGACATGTTGAGAAACGATCAAAAGCAACTTAATTCTCGATTCAATA 180
consensus_5153#1      ------------------------------------------------------------
                                                                                  

consensus_5153#0      ACTCTCCCAACGTACCAGAATGTGCTCATTAGATTGTCATTGGATTTGTTTACAGCAATA 240
consensus_5153#1      ------------------------------------------------------------
                                                                                  

consensus_5153#0      GTTTTGTGTAATTCATAAACAACTTTCACCCCACTGTTTAGTCAGGTTCTGGAGACTTCT 300
consensus_5153#1      ---------------------------------CAGCTCGGGCACA---TGTGGCCTTTT 24
                                                       * * *  * **     **  * *** *

consensus_5153#0      GTCTTACCCCTTCTGAAAGGCCCACGACTCGCTCTCGCTCTCTGGATGCTGATACCATTG 360
consensus_5153#1      TTTTTATTTTTTTTTTTCGCCATTAAACTATATTTTACA---TAAATAACACAAACGTAT 81
                       * ***    ** *    * *     ***   * *  *    *  **      * * *  

consensus_5153#0      CAGTGAGTCATTGTGTGTAAC-TTCTGTTGCCTTTCTTTG-CAGGTCTATGCAACAAGTG 418
consensus_5153#1      AAATCA-CAACCAAAAATAACATTATCCAACCCAACACAAACAACTTTGGGTTTTACATT 140
                       * * *   *       **** ** *    **   *     **  * *  *    *  * 

consensus_5153#0      CACAAATTGCGCACACATACAGCTCACCGGACTAGTAGAGCCAATGCATCGGCAATCGCT 478
consensus_5153#1      TAAAAATT-TAAATTTGAATCTATTGCTACATTAATTTATCGAAATTAAATTAAATCATA 199
                       * *****    *     *    *  *   * ** *  * * **   *     ****   

consensus_5153#0      TTAACGCCCATTTTCTTCTCACTCCTCGTTTCGCCACCCCCCCATGGAAAAGAAAGTGCA 538
consensus_5153#1      TCCATGCACAAT-----CACGCGTAAAGGTTAACCAACGACCCCTGTAA---------CC 245
                      *  * ** ** *     * * *     * **  *** *  *** ** **         * 

consensus_5153#0      TTCTTCTTATCAACGCGTCGCCAGACCCAGAACAGACATAAGCACACGGTGACGATTCTC 598
consensus_5153#1      TTGTGCCCTACATCGCATCTGTCAACCTGCATCG-----ATACACGCGAT-ACATCCTTC 299
                      ** * *    ** *** **     ***   * *      *  *** ** * **     **

consensus_5153#0      GTCCACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAATCTTATCGATGACGGCTT 658
consensus_5153#1      GT--GGTGTTGGTTACAG--GCCGTC-CGACAGCAAAGAGTGTGTGTTGCATAA----TT 350
                      **      *  *   ***  ** *   *  *****       * *  *  ** *    **

consensus_5153#0      CCCAGATTCTTCTCTCCGCATGACCGCTGAT--AACCGCCGAGCGAGTTTGGC-TGGTCC 715
consensus_5153#1      GCCAAACTCGCAAGCACGGAGACCGGTCGGTGCAGCTGCCAAGCGCACTTAGTGTGTTGC 410
                       *** * **       ** *   * *  * *  * * *** ****   ** *  ** * *

consensus_5153#0      GTCCAAGGAGCTTCATGGGATGAATCGACTTCGGTTGGTTTCAGTACGGTGCCATACACG 775
consensus_5153#1      ATTCTGACTCTACCCTTCGTCGCGGACGCGTTACTTCGCGGTAAATCTGTCCTGGGATCT 470
                       * *         * *  *  *      * *   ** *    *   * ** *      * 

consensus_5153#0      CCACGGCGAGGTTCGTGCTTTATCGATCGTTGTACTTTTTTTGCGAACCACACTCTAGAC 835
consensus_5153#1      CGTGGCCGGTGTTGTTGCTCAA--GCCCGACGCACTTTTTTTGCGAACCACACTCTAGAC 528
                      *   * **  ***  ****  *  *  **  * ***************************

consensus_5153#0      AAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAAT 895
consensus_5153#1      AAACTCCCTTCAGAACGTATCGTCTCCATGATTGTGCATGAACTGCGAACAATAATTAAT 588
                      ************************************************************

consensus_5153#0      GATGCCCTGCT-TCGCCACTACTCCCGCTGTCCAGATGTGCGAGTTATTTCTCTTTCTTT 954
consensus_5153#1      GATGCTCTCTCGTCGCCACTACTCCCGCTGTCCAGATGTGCGAGTGATTGCTCTT-CTTC 647
                      ***** **    ********************************* *** ***** *** 

consensus_5153#0      CCCAACGTTTGGCAGCTAAAAAA-------------------------- 977
consensus_5153#1      CCCAACGTTTGGCAGCCCCAGTGGGCCAACAGTTCTCGAGGAATTCCGC 696
                      ****************   *