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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence
[TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCCCCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAACGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGT--GTGAG--TG-TGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACACACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATGA]
[+] EMBL BX608600 [TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCCCCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAACGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGT GTGAG TG TGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACACACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTC ]
[+] EMBL BX621592 [ GTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGAGTGTGTATGATGAGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAACTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAAACATAAACACACATACAACACACAAAATGTGGAAGAAATTAAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTAAGCAAGTGTGC GGTGGGTGCGTGTTGTACAAAAACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTTGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATGA]
consensusID : consensus_5156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGTAGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTTAGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATAGGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC]
[+] EMBL AL694375 [GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGTAGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTTAGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATAGGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC]
consensusID : consensus_5156#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAAATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT]
[+] EMBL AL695989 [AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAAATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5156#0 TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCC 60
consensus_5156#1 ------------------------------------------------------------
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 CCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAA 120
consensus_5156#1 ------------------------------------------------------------
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 CGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCA 180
consensus_5156#1 ------------------------------------------------------------
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 AAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGTGA 240
consensus_5156#1 ------------------------------------------------------------
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 GTGTGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTAC 300
consensus_5156#1 ------------------------------------------------------------
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 TGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACAC 360
consensus_5156#1 --------------------------------------------------------GCCC 4
consensus_5156#2 ----------------------------------------------------------AA 2
consensus_5156#0 ACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTA 420
consensus_5156#1 G-AGGTTACACACAAAATGTGGAAGAAATTTAAACGTAAT--AAAAAAACCCTGTTTGTA 61
consensus_5156#2 GAAATTTAAACGTAAA---TAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAA 59
* * ** *** * ** *** * *** * *** *
consensus_5156#0 GTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATG-TTAGCAAGTGTG--- 476
consensus_5156#1 GTTAA-TTATTCAATTTTACCGATTAGTAAACGAATCGCAAATG-TTAGCAAGTGTG--- 116
consensus_5156#2 ---AATTTATTCAAGTTTTACGATTAGTAA-CGAATCGCAAATGGTTAGCAAAGGTGGTG 115
** ******** *** ********** ************* ******* ***
consensus_5156#0 CGGGGGGGG-GGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTT 535
consensus_5156#1 CGGGGGGGG-GGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTT 175
consensus_5156#2 CGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTT 175
********* ******************** *****************************
consensus_5156#0 TGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTA 595
consensus_5156#1 TGGTTAGTCGTCGTC-TTCCCTCCCATCCCAATATA-TTCCACC-ATTTCTTCGTACTTA 232
consensus_5156#2 TGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACC-ATTTCTTCGT----- 229
** ************ ******************** ******* **********
consensus_5156#0 TAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATT 655
consensus_5156#1 TTAGCATAG--GGAAGTT-AAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATT 289
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 CTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTA 715
consensus_5156#1 CTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTA 349
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 AAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGC 775
consensus_5156#1 GAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGC 409
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 A-GTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAAT 834
consensus_5156#1 ACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAAT 469
consensus_5156#2 ------------------------------------------------------------
consensus_5156#0 CGCATGA---------------------------------- 841
consensus_5156#1 CG-ATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC 509
consensus_5156#2 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||