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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[GCACCATGGATCGCGAGCTCGCAACGACACTGATGCACCGTGCTTCCTTAGCGTGCACCAGCAATATATTTAATCAAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGACTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGGTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCTACAACTTCATCAACGGGCTGGAGGTGCTGCACCTGATCGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAAGAAATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCTAACCTGCGCGTGATCAACCTGTACGGCATCAACTTCATCGACGATTCGCACATCGACGCGTTCAGCTCGAACTGCATCCAGCTGGAGTGT]
[+] EMBL BX612531 [GCACCATGGATCGCGAGCTCGCAACGACACTGATGCACCGTGCTTCCTTAGCGTGCACCAGCAATATATTTAATCAAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGACTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGGTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCTACAACTTCATCAACGGGCTGGAGGTGCTGCACCTGATCGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAAGAAATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCTAACCTGCGCGTGATCAACCTGTACGGCATCAACTTCATCGACGATTCGCACATCGACGCGTTCAGCTCGAACTGCATCCAGCTGGAGTGT]
consensusID : consensus_5160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAAATTCGGACGTTTGGCTCGCGTAGCTGCTGTGCAAAAACAAGGGACCTTTTGTTGTGTGAAGGGGAAAATCCTTTTAAAAAAAAACCCTTTAATTAACGATGGATCTTTCGAGCGATGTGTGGAATCAAGTGGCACTGGAAGCATCCCAGCTGTACTTCACCGAAGATGGCAAAAGCCCGTTCGCTAATACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGATTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCT]
[+] EMBL BM622305 [CCGCCCACGCGTCCGCCCACGCGTCCGAAAATTCGGACGTTTGGCTCGCGTAGCTGCTGTGCAAAAACAAGGGACCTTTTGTTGTGTGAAGGGGAAAATCCTTTTAAAAAAAAACCCTTTAATTAACGATGGATCTTTCGAGCGATGTGTGGAATCAAGTGGCACTGGAAGCATCCCAGCTGTACTTCACCGAAGATGGCAAAAGCCCGTTCGCTAATACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTCGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACGCACACCGTGCTGCACGAGCTGTCCTCCAAGTGTCCGAATCTGACGCACATGCTGCTCGATTTCTCGACGGCTATGCAGCTGCACGACTTTAGCGAAATGCAAGCCTTCCCGGCCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAGATCT]
consensusID : consensus_5160#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[GCAGATCCCCGAGGTTNATCCGTATNAGCCGCTAAGCGTTACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCCTCCCAGCTTTTCTTTGGCTCTAGCGATGGAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATACGCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTACAGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACTGCACAACGTGCTGCACGAGCTGTCCTCCAAGTNGTACCGAATCTGACGCACATGCTGCATCGATTACTCGACGGCGTATGCAGCTGCACGANTATTAGCCGAANATGCAAGCCTNCCCGGCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTCCATGCGCNCAGATCTACCAATTCACTCAACAGGGCTGGAGNGTGCTGACCTGATCGGCACGTACGAGAAGTGCCAGGAGNGANGNGGAAGACATC]
[+] EMBL AL694439 [GCAGATCCCCGAGGTTNATCCGTATNAGCCGCTAAGCGTTACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCCTCCCAGCTTTTCTTTGGCTCTAGCGATGGAACGTCCATCGAAAAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGAGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATACGCTACAACACGCAGCTGTGGAAGAATGTGTCGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTGCTGCAGCTCATCTCGGTGCGGTTCGGACCGTACAGCTGCGCTACATCGAGCTGCCGATCGAGCTGATCACTGCACAACGTGCTGCACGAGCTGTCCTCCAAGTNGTACCGAATCTGACGCACATGCTGCATCGATTACTCGACGGCGTATGCAGCTGCACGANTATTAGCCGAANATGCAAGCCTNCCCGGCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCATGGAGGGCTCCATGCGCNCAGATCTACCAATTCACTCAACAGGGCTGGAGNGTGCTGACCTGATCGGCACGTACGAGAAGTGCCAGGAGNGANGNGGAAGACATC]
consensusID : consensus_5160#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCCGAGTTTTACGATCGTTTTCGAATTGGTTTATTTTTTGCTTCTTTCCGATTCGATTTGAGTGACAGATCAATTTACACCACTACCCGGGGATCGGAATCAGTGGGTGAAAACCATCCGTATCAGCCGCTAAGCGTTAACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCTCCCAGCTTTTCTTTGGCTCTAGTGATGGAACGTCCATCGAANAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTAACTGAGCCATTTGGACGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAAACGCAGCTGTGGAACGAATGTGTACGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTAGCTGGCAGTCATCTCGGTGCGGTTCGGACCGTCGCTNGCGCTACATCGAGCTGCCGATCGAGCTCGATCACGCACACCGTGCTGCACGAGNCTGTACTCCAAGTGTCCGAATCTGACGCACATGCTGCCTCGACTANCTCGACGGTATGCAGCTGCACGACTTTAGCGNAATGNNAGCCTTACCGG]
[+] EMBL AL695829 [CCCGAGTTTTACGATCGTTTTCGAATTGGTTTATTTTTTGCTTCTTTCCGATTCGATTTGAGTGACAGATCAATTTACACCACTACCCGGGGATCGGAATCAGTGGGTGAAAACCATCCGTATCAGCCGCTAAGCGTTAACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGTTCAGGAAACGACCTCCCAGCTTTTCTTTGGCTCTAGTGATGGAACGTCCATCGAANAACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTAACTGAGCCATTTGGACGATATGTCGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAAACGCAGCTGTGGAACGAATGTGTACGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTAGCTGGCAGTCATCTCGGTGCGGTTCGGACCGTCGCTNGCGCTACATCGAGCTGCCGATCGAGCTCGATCACGCACACCGTGCTGCACGAGNCTGTACTCCAAGTGTCCGAATCTGACGCACATGCTGCCTCGACTANCTCGACGGTATGCAGCTGCACGACTTTAGCGNAATGNNAGCCTTACCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5160#2 ------------------------------------------------------------
consensus_5160#3 CCCGAGTTTTACGATCGTTTTCGAATTGGTTTATTTTTTGCTTCTTTCCGATTCGATTTG 60
consensus_5160#0 ------------------------------------------------------------
consensus_5160#1 --CCGCCCACGCGTCCGCCCACGCGTCCGAAAATTCGG-ACGTTTGGCTCGCGTAGCTGC 57
consensus_5160#2 --------------------------------------GCAGATCCCCGAGGTTNATCCG 22
consensus_5160#3 AGTGACAGATCAATTTACACCACTACCCGGGGATCGGAATCAGTGGGTGAAAACCATCCG 120
consensus_5160#0 ------------------------------------------------------------
consensus_5160#1 TGTGCAAAAACAAGGGACCTTTTGTTGTGTGAAGGGGAAAATCCTTTTAAAAAAAAACCC 117
consensus_5160#2 TATNAGCCGCTAAGCGTTA-CGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGT 81
consensus_5160#3 TATCAGCCGCTAAGCGTTAACGCTCTCACAATTAAATGGATTTACTTTTTCCGGTAACGT 180
consensus_5160#0 ------------------------------GCACCATGGATCGCGAGCTCGCAACGACAC 30
consensus_5160#1 TTTAATTAACGATGGAT---CTTTCGAGCGATGTGTGGAATCAAGTGGCACTGGAAGCAT 174
* ** *
consensus_5160#2 TCAGGAAACGACCCTCCCAGCTTTTCTTTGGCTCTAG---CGATGGAACGTCCATCGAAA 138
consensus_5160#3 TCAGGAAACGACC-TCCCAGCTTTTCTTTGGCTCTAG---TGATGGAACGTCCATCGAAN 236
consensus_5160#0 TGATGCACCGTGCTTCCTTAGCGTGCACCAGCAATATATTTAATCAAACGTCCATCGAAA 90
consensus_5160#1 CCCAGCTGTACTTCACCGAAGATGGCAAAAGCCCGTT---CGCTAATACGTCCATCGAAA 231
* ** * ** * ************
consensus_5160#2 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGA-GATATGT 197
consensus_5160#3 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTAACTGAGCCATTTGGACGATATGT 296
consensus_5160#0 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGA-GATATGT 149
consensus_5160#1 AACTTCCGGATAAGGTAATCCTGCACATCTTTTCCTACCTGAGCCATTTGGA-GATATGT 290
************************************* ************** *******
consensus_5160#2 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATACGCTACAACACGCAGCTGTGGAA- 256
consensus_5160#3 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAA-ACGCAGCTGTGGAAC 355
consensus_5160#0 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAA- 208
consensus_5160#1 CGCATGGCGACGGTGTGCCGCCGCTGGCGAACCATCGCCTACAACACGCAGCTGTGGAA- 349
*********************************** ****** **************
consensus_5160#2 GAATGTGT-CGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCT-G 314
consensus_5160#3 GAATGTGTACGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCTAG 415
consensus_5160#0 GAATGTGT-CGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCT-G 266
consensus_5160#1 GAATGTGT-CGCTGCGGCCGGAAGTGTCGGGACTGCACGTGGGATCGCTCGAGTCGCT-G 407
******** ************************************************* *
consensus_5160#2 CTGCAGCTCATCTCGGTGCGGTTCGGACCGTACAGCTGCGCTACATCGAGCTGCCGATCG 374
consensus_5160#3 CTGGCAGTCATCTCGGTGCGGTTCGGACCGT-CGCTNGCGCTACATCGAGCTGCCGATCG 474
consensus_5160#0 CTGCAGCTCATCTCGGTGCGGTTCGGACCGT--CGCTGCGCTACATCGAGCTGCCGATCG 324
consensus_5160#1 CTGCAGCTCATCTCGGTGCGGTTCGGACCGT--CGCTGCGCTACATCGAGCTGCCGATCG 465
*** ************************ ***********************
consensus_5160#2 AGCT-GATCACTGCACAACGTGCTGCACGAGC-TGTCCTCCAAGTNGTACCGAATCTGAC 432
consensus_5160#3 AGCTCGATCAC-GCACACCGTGCTGCACGAGNCTGTACTCCAAGTGT--CCGAATCTGAC 531
consensus_5160#0 AGCT-GATCAC-GCACACCGTGCTGCACGAGC-TGTCCTCCAAGTGT--CCGAATCTGAC 379
consensus_5160#1 AGCT-GATCAC-GCACACCGTGCTGCACGAGC-TGTCCTCCAAGTGT--CCGAATCTGAC 520
**** ****** ***** ************* *** ******** ***********
consensus_5160#2 GCACATGCTGCATCGATTAC-TCGACGGCGTATGCAGCTGCACGANTATTAGCCGAANAT 491
consensus_5160#3 GCACATGCTGCCTCGACTANCTCGACGG--TATGCAGCTGCACGACT-TTAGC--GNAAT 586
consensus_5160#0 GCACATGCTGC-TCGACTTC-TCGACGGC-TATGCAGCTGCACGACT-TTAGC--GAAAT 433
consensus_5160#1 GCACATGCTGC-TCGATTTC-TCGACGGC-TATGCAGCTGCACGACT-TTAGC--GAAAT 574
*********** **** * ******* *************** * ***** **
consensus_5160#2 GCAAGCCTNCCCGGC-AAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCAT 550
consensus_5160#3 GNNAGCCTTACCGG---------------------------------------------- 600
consensus_5160#0 GCAAGCCTTCCCGGCCAAGCTGCGGTACATGTGCATCTGCCTGTCGGAGGTGATCTTCAT 493
consensus_5160#1 GCAAGCCTTCCCGGCCAAGCTGCGCTACATGTGCATCTGCCTGTCGGAGGTGATCTTCAT 634
* ***** ****
consensus_5160#2 GGAGGGCTCCATGCGCNCAGATCTACCAATTCACTCAACAGGGCTGGAGNGTGCTGACCT 610
consensus_5160#3 ------------------------------------------------------------
consensus_5160#0 GGAGGGCTTCATGCGCA-AGATCTACAACTTCATCAAC--GGGCTGGAGGTGCTGCACCT 550
consensus_5160#1 GGAGGGCTTCATGCGCA-AGATCT------------------------------------ 657
consensus_5160#2 GATCGGCACGTACGAGAAGTGCCAGGAGNGANGNGGAAGACATC---------------- 654
consensus_5160#3 ------------------------------------------------------------
consensus_5160#0 GATCGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAAGAAATCTACGAGGTGATCAACGT 610
consensus_5160#1 ------------------------------------------------------------
consensus_5160#2 ------------------------------------------------------------
consensus_5160#3 ------------------------------------------------------------
consensus_5160#0 GCACAAGCTCAAGTCGGCCACGCCTAACCTGCGCGTGATCAACCTGTACGGCATCAACTT 670
consensus_5160#1 ------------------------------------------------------------
consensus_5160#2 -------------------------------------------------------
consensus_5160#3 -------------------------------------------------------
consensus_5160#0 CATCGACGATTCGCACATCGACGCGTTCAGCTCGAACTGCATCCAGCTGGAGTGT 725
consensus_5160#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||