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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1238 fasta sequence
[CGGTTTTGGGATGAAACATTGATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCACCTTTGGTTGCGGTTTTTAGTTTGTAAGCCACAACATTAATCGTCTATTATCCATTTTTTTTATCAATTTACATTTACAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCCAGTTTACATTATTCCTTATCGTGCACTTCATCCATGATCGTATACTAAACACGATGGCACCGTTGGTGCACGTGTAGATCGTACAAAAAACATGAACCTGAATTTACCAATCCAGAAAAAAAGCCCAAAATACCTTTATGTTGCCATAGAAATAGCATACCACGTGTTTGAATTGTTACAGGGTTTCTGGCTTGAAACAGCAGCTCGCACATTTCCAACGTGCAATCGACTTAGTGTGACAATAGAGTCGGGATAGTGTGCTGAGCGCTTGCAAGCCAAAATTCTCGGTACAATCTCTAAACCGCCAGATTGCAAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGTTGAACGGTAGAAGTATTTATAGTAAACACATTACACATTACACTTACNACGGCCGATATTTGCGGAGAGCATTATAAATGATCGTTTGAAATTCGATTCATCTCACTACTACGACTACCAAACGATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTACATGACTAATCACACATATAGCGCAAATGGAGTGTAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTCAAAAACACATACACACACTCATTCTAAAGCAAGAGCCAAATAGAGCCACAGCAAAATGAATTACCGATAGTTCTATTCGGAAGGGTGCGTGGGAAGGGTATGTGTTTGTTAATGGATTAATGAAGTTGTTGTTTGCATAGACTAAATTCCCCGCACGTTTCCGAAGACAAGTACCGAAAGGAAAGGCGTAGTAATGAGGAATGAGGCAATCTCACTTTTCAAGATAGCACGTTACTTTGTGCCTACATATGTATGCGATACATGATAGATCCAGTGTAAAATGGTAGAATGCTCGAATTAGCCCCGAAAATGTCAACACATCTTGCGGTAGGGTTAATTAATGTAAATTAAAAGCTTGCGGGTTTCTTATTATGCTGTTTAGGTT]
[+] EMBL BX627000 [CGGTTTTGGGATGAAACATTGATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCACCTTTGGTTGCGGTTTTTAGTTTGTAAGCCACAACATTAATCGTCTATTATCCATTTTTTTTATCAATTTACATTTACAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCCAGTTTACATTATTCCTTATCGTGCACTTCATCCATGATCGTATACTAAACACGATGGCACCGTTGGTGCACGTGTAGATCGTACAAAAAACATGAACCTGAATTTACCAATCCAGAAAAAAAGCCCAAAATACCTTTATGTTGCCATAGAAATAGCATACCACGTGTTTGAATTGTTACAGGGTTTCTGGCTTGAAACAGCAGCTCGCACATTTCCAACGTGCAATCGACTTAGTGTGACAATAGAGTCGGGATAGTGTGCTGAGCGCTTGCAAGCCAAAATTCTCGGTACAATCTCTAAACCGCCAGATTGCAAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGTTGAACGGTAGAAGTATTTATAGTAAACACATTACACATTACACTTACNACGGCCGATATTTGCGGAGAGCATTATAAATGATCGTTTGAAATTCGATTCATCTCACTACTACGACTACCAAACGATATGCACT ]
[+] EMBL BM597288 [ ccgACACATTACACTTACAACGGCCGATATTTGCGGAGAGCATTATAAATGATCGTTTGAAATTCGATTCATCTCACTACTACGACTACAAAACGATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTACATGACTAATCACACATATAGCGCAAATGGAGTGTAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTCAAAAACACATACACACACTCATTCTAAAGCAAGAGCCAAATAGAGCCACAGCAAAATGAATTACCGATAGTTCTATTCGGAAGGGTGCGTGGGAAGGGTATGTGTTTGTTAATGGATTAATGAAGTTGTTGTTTGCATAGACTAAATTCCCCGCACGTTTCCGAAGACAAGTACCGAAAGGAAAGGCGTAGTAATGAGGAATGAGGCAATCTCACTTTTCAAGATAGCACGTTACTTTGTGCCTACATATGTATGCGATACATGATAGATCCAGTGTAAAATGGTAGAATGCTCGAATTAGCCCCGAAAATGTCAACACATCTTGCGGTAGGGTTAATTAATGTAAATTAAAAGCTTGCGGGTTTCTTATTATGCTGTTTAGGTT]
consensusID : consensus_5162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[CGAGGTTATTTCGTTGGCATGTGTAGTGTTGTTGGAGAAATCTCATTCGTAAGAGTTGTGACCACACCGGTTTTGGATGAAACATTAATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCATTGGTTGCGGGTTTTAGTTTGTAAGCCCCAACATTAATCGTCTATTATCCATTTTTTTATCAATTTACATTTCAACCCCTATATTCCATTAACCGGATACCAAGGTTAGATGAATTAACCAAAAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCTAGTTTACATTATTCCTTATCGTACACTTCATCGATGATCGTGTACTAAACACGATGGCACCATTGGTGCACATGTAGATCATAAAAATACATGATCGTGAATTTGAATTTGAAGAAAAATGCTCAAAATACCTTTACGTTGCCATAGAAATAGTATACCACGTGTTTGAATTGTTG]
[+] EMBL AL694482 [CGAGGTTATTTCGTTGGCATGTGTAGTGTTGTTGGAGAAATCTCATTCGTAAGAGTTGTGACCACACCGGTTTTGGATGAAACATTAATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCATTGGTTGCGGGTTTTAGTTTGTAAGCCCCAACATTAATCGTCTATTATCCATTTTTTTATCAATTTACATTTCAACCCCTATATTCCATTAACCGGATACCAAGGTTAGATGAATTAACCAAAAAGGGCCTATTTTTATATGAGTGACTTAAAACATTACCTAGTTTACATTATTCCTTATCGTACACTTCATCGATGATCGTGTACTAAACACGATGGCACCATTGGTGCACATGTAGATCATAAAAATACATGATCGTGAATTTGAATTTGAAGAAAAATGCTCAAAATACCTTTACGTTGCCATAGAAATAGTATACCACGTGTTTGAATTGTTG]
consensusID : consensus_5162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[GATCGCCCGAGGTNACTTAGTGTGACAAGAGTCGGGATAGTGCGCTGAGCGCTGCAAGCCAAAATCTCGGTTACATTCTCTTAACCGCCAAGAGAGAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGATGAACGGTAGAAGTATTTATAGTAAACACATTACAAATTACACTTAGAACGGCCGATATTTGCGGAAAGCATGATAAATGATGGTTTGAAATTCGATTCATCTCACTACTACTACTACTACAAAACCATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTATATGACTAATCACACATAATAGCGCAAATGGAGTGGAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTAAAAAA]
[+] EMBL AL930421 [GATCGCCCGAGGTNACTTAGTGTGACAAGAGTCGGGATAGTGCGCTGAGCGCTGCAAGCCAAAATCTCGGTTACATTCTCTTAACCGCCAAGAGAGAGAGCAGCCTAAATCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGATGAACGGTAGAAGTATTTATAGTAAACACATTACAAATTACACTTAGAACGGCCGATATTTGCGGAAAGCATGATAAATGATGGTTTGAAATTCGATTCATCTCACTACTACTACTACTACAAAACCATATGCACTACTTACTAGAGGGGTTGACTTCTTACCAAACTGGGGACTCGCACATTTGTTACTTGCAAAACGTATATGACTAATCACACATAATAGCGCAAATGGAGTGGAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5162#0 CGGTTTTGGGATGAAACATTGATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTA 60
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 GAATTGGAAGCCGTGTAGAAGTGAATTGTAGGTGGCCACCTTTGGTTGCGGTTTTTAGTT 120
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 TGTAAGCCACAACATTAATCGTCTATTATCCATTTTTTTTATCAATTTACATTTACAAGG 180
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 GCCTATTTTTATATGAGTGACTTAAAACATTACCCAGTTTACATTATTCCTTATCGTGCA 240
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 CTTCATCCATGATCGTATACTAAACACGATGGCACCGTTGGTGCACGTGTAGATCGTACA 300
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 AAAAACATGAACCTGAATTTACCAATCCAGAAAAAAAGCCCAAAATACCTTTATGTTGCC 360
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 ATAGAAATAGCATACCACGTGTTTGAATTGTTACAGGGTTTCTGGCTTGAAACAGCAGCT 420
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 --------------------------------------------CGAGGTTATTTCGTTG 16
consensus_5162#0 CGCACATTTCCAACGTGCAAT-CGACTTAGT-GTGACAATAGAGTCGGGATAG----TGT 474
consensus_5162#2 ----------GATCGCCCGAGGTNACTTAGT-GTGACAA--GAGTCGGGATAG----TGC 43
consensus_5162#1 GCATGTGTAGTGTTGTTGGAGAAATCTCATTCGTAAGAGTTGTGACCACACCGGTTTTGG 76
* * ** * * ** * * * * * * * **
consensus_5162#0 GCTGAGCGCTTGCAA-GCCAAAATTCTCGGTACAATCTCTAAACCGCCAGATTGCAAGAG 533
consensus_5162#2 GCTGAGCGCT-GCAA-GCCAAAATCTCGGTTACATTCTCTTAACCGCCA-AGAGAGAGAG 100
consensus_5162#1 ATGAAACATTAATAATACTTAGGACTGTAAAAGGGGGACGGGAGGGCGTAGAATTGGAAG 136
* * * ** * * * * * ** **
consensus_5162#0 CAGCCTAAA--TCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGTTGAACGGTAGA 591
consensus_5162#2 CAGCCTAAA--TCATTCCAAAGACGCTAAAGAAACAGGTATAGTGTTGATGAACGGTAGA 158
consensus_5162#1 CCGTGTAGAAGTGAATTGTAGGTGGCCATTGGTTGCGGGTTTTAGTTTGTAAGCCCCAAC 196
* * ** * * * * * * ** * * ** * *** * * * *
consensus_5162#0 AGTATTTAT--AGTAAACACATTA----CACATTACACTTACNACGGCCGATATTTG--- 642
consensus_5162#2 AGTATTTAT--AGTAAACACATTA----CAAATTACACTTAGAACGGCCGATATTTG--- 209
consensus_5162#1 ATTAATCGTCTATTATCCATTTTTTTATCAATTTACATTTCAACC--CCTATATTCCATT 254
* ** * * * ** ** ** ** ***** ** * ** *****
consensus_5162#0 ---CGGAGAGCATTAT-AAATGATCGTTTGAAATTCGATTCATCTCACTACTACGA--CT 696
consensus_5162#2 ---CGGAAAGCATGAT-AAATGATGGTTTGAAATTCGATTCATCTCACTACTACTA--CT 263
consensus_5162#1 AACCGGATACCAAGGTTAGATGAATTAACCAAAAAGGGCCTATTTTTATATGAGTGACTT 314
**** * ** * * **** *** * ** * ** * *
consensus_5162#0 ACCA---AACG--ATATGCACTACTTACTA--GAGGGGTTGACTTCTTACCAA--ACTGG 747
consensus_5162#2 ACTACAAAACC--ATATGCACTACTTACTA--GAGGGGTTGACTTCTTACCAA--ACTGG 317
consensus_5162#1 AAAACATTACCTAGTTTACATTATTCCTTATCGTACACTTCATCGATGATCGTGTACTAA 374
* * ** * * ** ** * ** * ** * * * * ***
consensus_5162#0 GGAC--TCGCACATTTGTTACTTGCAAAACGTACATGACTAATCACACATA-TAGCGCAA 804
consensus_5162#2 GGAC--TCGCACATTTGTTACTTGCAAAACGTATATGACTAATCACACATAATAGCGCAA 375
consensus_5162#1 ACACGATGGCACCATTGGTGCACATGTAGATCATAAAAATACATGATCGTGAATTTGAAT 434
** * **** *** * * * * * * ** * * * *
consensus_5162#0 ATGGAGTGTAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTCAAAAACACATA 864
consensus_5162#2 ATGGAGTGGAATAAGTTAGACGCAATGATATTTTTCTAGCAACAGTTTAAAAAA------ 429
consensus_5162#1 TTGAAGAAAAATGCTCAAAATACCTTTACGTTGCCATAGAAATAGTATACCACGTGTTTG 494
** ** *** * * * * * ** *** ** *** * *
consensus_5162#0 CACACACTCATTCTAAAGCAAGAGCCAAATAGAGCCACAGCAAAATGAATTACCGATAGT 924
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 AATTGTTG---------------------------------------------------- 502
consensus_5162#0 TCTATTCGGAAGGGTGCGTGGGAAGGGTATGTGTTTGTTAATGGATTAATGAAGTTGTTG 984
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 TTTGCATAGACTAAATTCCCCGCACGTTTCCGAAGACAAGTACCGAAAGGAAAGGCGTAG 1044
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 TAATGAGGAATGAGGCAATCTCACTTTTCAAGATAGCACGTTACTTTGTGCCTACATATG 1104
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 TATGCGATACATGATAGATCCAGTGTAAAATGGTAGAATGCTCGAATTAGCCCCGAAAAT 1164
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 GTCAACACATCTTGCGGTAGGGTTAATTAATGTAAATTAAAAGCTTGCGGGTTTCTTATT 1224
consensus_5162#2 ------------------------------------------------------------
consensus_5162#1 ------------------------------------------------------------
consensus_5162#0 ATGCTGTTTAGGTT 1238
consensus_5162#2 --------------
consensus_5162#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||